Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq5730 109 2e-19 >seq5730 Length=1907 Score = 109 bits (120), Expect = 2e-19 Identities = 235/348 (68%), Gaps = 10/348 (3%) Strand=Plus/Minus Query 37166 TGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCGACCTGGGCATCATCCCTG 37225 ||||| | ||||| || || || || | || || ||||| ||||||||||| || | Sbjct 764 TGCTGATCACCCGTAAGGGCGCGGTGAGCGCACGTACCGGCGAGCTGGGCATCATTCCCG 705 Query 37226 GCTCGATGGGT--GCGAAGTCATTCATCGTTCGCGGCAAGGGAAATTCCGAATCGTTCTG 37283 || ||||| ||| || | |||||| || || || || | || ||| Sbjct 704 GCAGCATGGGCACGCGCAGCTA--CATCGTGCGTGGGTTAGGCAACGCAGAGAGCTTCCA 647 Query 37284 CTCTTGCAGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAGCAAAACGCCGGTTCAC 37343 |||||||||||||| || || |||||||||| ||| ||| | | |||| Sbjct 646 TAGCTGCAGCCACGGTGCGGGACGGGTGATGAGCCGAACCGCAGCGCGTGCACAGATCAC 587 Query 37344 AGTCG---AGGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCAAAGATGCCGAAGT 37400 | | || | | |||||| | | | | | || |||||||| ||||| | ||| Sbjct 586 GCTGGCTCAGCACCGCGAGGCGACTGCGCATG---TGGAATGCCGCAAGGATGCGGCAGT 530 Query 37401 GATCGACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGC 37460 ||||||||| |||||||||| |||||| ||||| ||||| ||||||||||| | Sbjct 529 GATCGACGAATCGCCAGCGGCATACAAGTCGATCGAGGCGGTGATGGCCGCGCAGCAGGA 470 Query 37461 CCTGGTGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGG 37508 || || || | |||||||||||||||| || || ||| | ||||| Sbjct 469 TCTTGTCGAAGTGCTGCACACGCTGCGCCAGGTGGTGTGCATCAAGGG 422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139263209901032