Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq5177 603 2e-167 >seq5177 Length=2144 Score = 603 bits (668), Expect = 2e-167 Identities = 777/1064 (73%), Gaps = 21/1064 (2%) Strand=Plus/Plus Query 71308 GAACCGATGTTCCTGGGTCAGTCGGTTAACGTCTCACGTTATGATCAGCAGAAGTACCCC 71367 |||||||||||| | |||||| | || ||||| | || ||||| |||||||| ||||| Sbjct 7 GAACCGATGTTCTTTGGTCAGCCCGTCAACGTGGCGCGGTATGACCAGCAGAAATACCCG 66 Query 71368 GCGTTCGAAAAGCTGATTGAGAAACAACTTTCATTCTTCTGGCGACCTGAAGAGGTGGAT 71427 | |||||||| ||||| ||||||||||| |||||||||||||| || |||||||||||| Sbjct 67 GTATTCGAAAAACTGATCGAGAAACAACTGTCATTCTTCTGGCGTCCGGAAGAGGTGGAT 126 Query 71428 GTTTCGCAAGACCGTATCGACTTCCAGGGGTTGCCAGATCATGAAAAACACATCTTCGTT 71487 || || || |||||| || | ||||| |||| || |||||||| ||||||||| | Sbjct 127 GTGTCACAGGACCGTTCTGATTATCAGGGCCTGCCCGAGCATGAAAAGCACATCTTCATC 186 Query 71488 TCTAACCTGAAATACCAAACCCTGCTGGACTCGATTCAGGGTCGTAGCCCGAACGTGGCC 71547 ||||| || ||||| || |||||||| || || ||||| |||||||| |||||||| Sbjct 187 AGCAACCTTAAGTACCAGACGCTGCTGGATTCCATCCAGGGCCGTAGCCCTAACGTGGCT 246 Query 71548 TTGCTGCCGATCTGTTCTATCCCGGAACTCGAAACCTGGATTGAAACCTGGGCGTTCTCT 71607 ||||| ||| | || | || || | ||||||||||| |||||||||||||| || Sbjct 247 TTGCTACCGCTGGTGTCATTGCCTGAGATTGAAACCTGGATAGAAACCTGGGCGTTTTCC 306 Query 71608 GAAACGATTCACTCGCGCTCATACACCCACATCATCCGTAATATCTTTACTGACCCCTCC 71667 || || || ||||||||||| |||||||| |||||||| || ||| | | ||| |||||| Sbjct 307 GAGACCATACACTCGCGCTCGTACACCCATATCATCCGCAACATCGTCAATGATCCCTCC 366 Query 71668 ATCGTGTTTGATGACATCGTGACCAACGAACACATCAAAGCGCGTGCTGAGTCCGTCACG 71727 ||| | ||||||||||||||| ||| ||| |||||| ||||| || | || || Sbjct 367 ATCATTTTTGATGACATCGTGCGCAATGAAAACATCACCGCGCGCGCATCGGATATCGCG 426 Query 71728 GAGTATTACGACCAGCTGATCGAAATGACCATGTACCTCAACTTA---CTGGGTGAAGGT 71784 | |||||||| | |||||| | ||||||| || | | | ||||| |||||| Sbjct 427 CATTATTACGATGAACTGATCCACCAGACCATG---CTGTATTCACAGCTGGGCGAAGGT 483 Query 71785 ACTCATGTAATCAATG--GTAAGAAAGTCGTGGTCTCGATGCGTGCTATCAAGCGTCTGG 71842 || | ||||||| | || || || |||| | || | | || ||| Sbjct 484 GAGCACATCATCAATGGCGAAACCAAATC--GGTCAACAAACGCGAGCTGAAAAAACTGC 541 Query 71843 TCTACCTGTGCATCGTGTCGGTCAACGTGTTGGAAGCCATCCGCTTCTATGTCTCGTTTG 71902 | |||| ||| | || || || | ||||||| ||||||||||| ||| || | Sbjct 542 TTTACCGCTGCCTGATGAACGTGAATATCCTGGAAGCGATCCGCTTCTACGTCAGCTTCG 601 Query 71903 CCTGCTCGTTTGCCTTTGCTGAACGCGAGCTGATGGAAGGCAACGCCAAGATCATTAAAC 71962 ||||||| || |||||||| || ||| || ||||||||||||||||||||||||| | Sbjct 602 CCTGCTCATTCGCCTTTGCCGAGCGCAAGGTGATGGAAGGCAACGCCAAGATCATCCGCC 661 Query 71963 TGATCGCCCGTGATGAAGCCCTGCATCTGACCGGCACCCAGCACATGATCATGTTAATGA 72022 |||| || ||||||||||||||||| ||||||||||||||||||||| ||| | ||| Sbjct 662 TGATTGCGCGTGATGAAGCCCTGCACCTGACCGGCACCCAGCACATGCTCAACATCATGC 721 Query 72023 AGTCCGGTGCTGACGATGCTGAGATGGCGGAAATCGTTAAAGAGTGTGAAGC-AGAAACA 72081 |||||| ||||| | ||| | || || || | || | || | | ||| Sbjct 722 GTTCCGGTCAAGACGACCCCGAGTTCGCCGAGATTGCCGCTGAAT-TGCATCAAGAGTGT 780 Query 72082 TACGCACTCTTTAAGGACGCTGCAGAGCAGGAGAAAGACTGGGCGAACTATCTATTCCAG 72141 | || | || || ||| || |||||||| ||| | ||||| | || || || | Sbjct 781 TTCGAGATGTTCAAAACCGCCGCCGAGCAGGAAAAACAATGGGCAGAATACCTGTTTAAA 840 Query 72142 GACGGGTCGATGATCGGTCTGAACAAAGAGATCGTGTGCCAGTACATCGAATACATCACC 72201 || || || ||||| || ||||||||||| ||| | |||||||| | |||||||||||| Sbjct 841 GATGGCTCCATGATAGGCCTGAACAAAGACATCCTCTGCCAGTATGTTGAATACATCACC 900 Query 72202 AACATCCGTATTCGCGCCATCGGTTACGATGACATC----TACGCCGGTGTCAAAGCTAA 72257 |||| |||||| | | |||||| || || | | | || || |||| || Sbjct 901 AACAGCCGTAT----GGCCTCGGTTGGTTTGCCAGCCGCATTCCCCAATGCCAAAAGCAA 956 Query 72258 CCCAATCCCATGGATCAACTCCTGGTTGGTTTCTGACAACGTGCAAGTCGCTCCACAGGA 72317 ||| || |||||||||||| ||||| ||| || || | ||| |||||||| || ||||| Sbjct 957 CCCGATTCCATGGATCAACACCTGGCTGGCGTCAGATACCGTACAAGTCGCCCCGCAGGA 1016 Query 72318 AGTGGAAGTAAGTTCTTATCTGGTCGGTCAGATAGACTC-GAAA 72360 ||| ||| | || || || ||| |||||||||| || || |||| Sbjct 1017 AGTAGAACTCAGCTCCTACCTGATCGGTCAGATTGATTCAGAAA 1060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 867209766488640