Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_023557.1
Length=271084
Score E
Sequences producing significant alignments: (Bits) Value
seq5177 603 2e-167
>seq5177
Length=2144
Score = 603 bits (668), Expect = 2e-167
Identities = 777/1064 (73%), Gaps = 21/1064 (2%)
Strand=Plus/Plus
Query 71308 GAACCGATGTTCCTGGGTCAGTCGGTTAACGTCTCACGTTATGATCAGCAGAAGTACCCC 71367
|||||||||||| | |||||| | || ||||| | || ||||| |||||||| |||||
Sbjct 7 GAACCGATGTTCTTTGGTCAGCCCGTCAACGTGGCGCGGTATGACCAGCAGAAATACCCG 66
Query 71368 GCGTTCGAAAAGCTGATTGAGAAACAACTTTCATTCTTCTGGCGACCTGAAGAGGTGGAT 71427
| |||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||||
Sbjct 67 GTATTCGAAAAACTGATCGAGAAACAACTGTCATTCTTCTGGCGTCCGGAAGAGGTGGAT 126
Query 71428 GTTTCGCAAGACCGTATCGACTTCCAGGGGTTGCCAGATCATGAAAAACACATCTTCGTT 71487
|| || || |||||| || | ||||| |||| || |||||||| ||||||||| |
Sbjct 127 GTGTCACAGGACCGTTCTGATTATCAGGGCCTGCCCGAGCATGAAAAGCACATCTTCATC 186
Query 71488 TCTAACCTGAAATACCAAACCCTGCTGGACTCGATTCAGGGTCGTAGCCCGAACGTGGCC 71547
||||| || ||||| || |||||||| || || ||||| |||||||| ||||||||
Sbjct 187 AGCAACCTTAAGTACCAGACGCTGCTGGATTCCATCCAGGGCCGTAGCCCTAACGTGGCT 246
Query 71548 TTGCTGCCGATCTGTTCTATCCCGGAACTCGAAACCTGGATTGAAACCTGGGCGTTCTCT 71607
||||| ||| | || | || || | ||||||||||| |||||||||||||| ||
Sbjct 247 TTGCTACCGCTGGTGTCATTGCCTGAGATTGAAACCTGGATAGAAACCTGGGCGTTTTCC 306
Query 71608 GAAACGATTCACTCGCGCTCATACACCCACATCATCCGTAATATCTTTACTGACCCCTCC 71667
|| || || ||||||||||| |||||||| |||||||| || ||| | | ||| ||||||
Sbjct 307 GAGACCATACACTCGCGCTCGTACACCCATATCATCCGCAACATCGTCAATGATCCCTCC 366
Query 71668 ATCGTGTTTGATGACATCGTGACCAACGAACACATCAAAGCGCGTGCTGAGTCCGTCACG 71727
||| | ||||||||||||||| ||| ||| |||||| ||||| || | || ||
Sbjct 367 ATCATTTTTGATGACATCGTGCGCAATGAAAACATCACCGCGCGCGCATCGGATATCGCG 426
Query 71728 GAGTATTACGACCAGCTGATCGAAATGACCATGTACCTCAACTTA---CTGGGTGAAGGT 71784
| |||||||| | |||||| | ||||||| || | | | ||||| ||||||
Sbjct 427 CATTATTACGATGAACTGATCCACCAGACCATG---CTGTATTCACAGCTGGGCGAAGGT 483
Query 71785 ACTCATGTAATCAATG--GTAAGAAAGTCGTGGTCTCGATGCGTGCTATCAAGCGTCTGG 71842
|| | ||||||| | || || || |||| | || | | || |||
Sbjct 484 GAGCACATCATCAATGGCGAAACCAAATC--GGTCAACAAACGCGAGCTGAAAAAACTGC 541
Query 71843 TCTACCTGTGCATCGTGTCGGTCAACGTGTTGGAAGCCATCCGCTTCTATGTCTCGTTTG 71902
| |||| ||| | || || || | ||||||| ||||||||||| ||| || |
Sbjct 542 TTTACCGCTGCCTGATGAACGTGAATATCCTGGAAGCGATCCGCTTCTACGTCAGCTTCG 601
Query 71903 CCTGCTCGTTTGCCTTTGCTGAACGCGAGCTGATGGAAGGCAACGCCAAGATCATTAAAC 71962
||||||| || |||||||| || ||| || ||||||||||||||||||||||||| |
Sbjct 602 CCTGCTCATTCGCCTTTGCCGAGCGCAAGGTGATGGAAGGCAACGCCAAGATCATCCGCC 661
Query 71963 TGATCGCCCGTGATGAAGCCCTGCATCTGACCGGCACCCAGCACATGATCATGTTAATGA 72022
|||| || ||||||||||||||||| ||||||||||||||||||||| ||| | |||
Sbjct 662 TGATTGCGCGTGATGAAGCCCTGCACCTGACCGGCACCCAGCACATGCTCAACATCATGC 721
Query 72023 AGTCCGGTGCTGACGATGCTGAGATGGCGGAAATCGTTAAAGAGTGTGAAGC-AGAAACA 72081
|||||| ||||| | ||| | || || || | || | || | | |||
Sbjct 722 GTTCCGGTCAAGACGACCCCGAGTTCGCCGAGATTGCCGCTGAAT-TGCATCAAGAGTGT 780
Query 72082 TACGCACTCTTTAAGGACGCTGCAGAGCAGGAGAAAGACTGGGCGAACTATCTATTCCAG 72141
| || | || || ||| || |||||||| ||| | ||||| | || || || |
Sbjct 781 TTCGAGATGTTCAAAACCGCCGCCGAGCAGGAAAAACAATGGGCAGAATACCTGTTTAAA 840
Query 72142 GACGGGTCGATGATCGGTCTGAACAAAGAGATCGTGTGCCAGTACATCGAATACATCACC 72201
|| || || ||||| || ||||||||||| ||| | |||||||| | ||||||||||||
Sbjct 841 GATGGCTCCATGATAGGCCTGAACAAAGACATCCTCTGCCAGTATGTTGAATACATCACC 900
Query 72202 AACATCCGTATTCGCGCCATCGGTTACGATGACATC----TACGCCGGTGTCAAAGCTAA 72257
|||| |||||| | | |||||| || || | | | || || |||| ||
Sbjct 901 AACAGCCGTAT----GGCCTCGGTTGGTTTGCCAGCCGCATTCCCCAATGCCAAAAGCAA 956
Query 72258 CCCAATCCCATGGATCAACTCCTGGTTGGTTTCTGACAACGTGCAAGTCGCTCCACAGGA 72317
||| || |||||||||||| ||||| ||| || || | ||| |||||||| || |||||
Sbjct 957 CCCGATTCCATGGATCAACACCTGGCTGGCGTCAGATACCGTACAAGTCGCCCCGCAGGA 1016
Query 72318 AGTGGAAGTAAGTTCTTATCTGGTCGGTCAGATAGACTC-GAAA 72360
||| ||| | || || || ||| |||||||||| || || ||||
Sbjct 1017 AGTAGAACTCAGCTCCTACCTGATCGGTCAGATTGATTCAGAAA 1060
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 867209766488640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |