Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq5297 86.0 8e-12 seq3496 86.0 8e-12 >seq5297 Length=2090 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19497 ATTCCTCTATAGCTCAGATGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19556 ||||||| ||||||||| ||||||||| ||||||||||| || ||||||||||||| Sbjct 1243 ATTCCTCAATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 1302 Query 19557 TCCCAGGTGGAGGAG 19571 ||||||| |||||| Sbjct 1303 GCCCAGGTTGAGGAG 1317 >seq3496 Length=3592 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 152587 TGGCGGAATTGGTAGACGCGCTGGTTTTAGGTACCAGTGTCTTATGACGTGGAGGTTCAA 152646 |||||||||||||||||||||| |||| ||||| ||||| | | ||||||||||||| | Sbjct 1717 TGGCGGAATTGGTAGACGCGCTAGTTTCAGGTATTAGTGTTTAACGACGTGGAGGTTCGA 1658 Query 152647 GTCCTCT 152653 ||||||| Sbjct 1657 GTCCTCT 1651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605575698827760