Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1795 197 1e-44 seq3384 96.9 3e-14 seq432 96.9 3e-14 >seq1795 Length=8984 Score = 197 bits (218), Expect = 1e-44 Identities = 934/1462 (64%), Gaps = 35/1462 (2%) Strand=Plus/Minus Query 281377 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 281436 || ||| ||||| || || || || ||| || || || || |||| | ||| || Sbjct 2707 ATCATTTGTAATCGTGATCTTGTTCTCTTTCCCCGTCGACTTCTCGACGGCTGACACGTT 2648 Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496 ||||| ||||| |||||| ||||||||||| ||||| ||||| || || | | | Sbjct 2647 TAGAATGCCATTCACATCCACGTCAAATGTGACGTCAATCTGAGGCACACCACGCGGCAT 2588 Query 281497 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 281556 ||| || || || ||||| |||| | || ||| || ||||| || | || Sbjct 2587 AGGCGGAATGCCGTCCAAGCTAAACTTGCCTAGAAGATGGTTATCGCGTGTCATCGCCCG 2528 Query 281557 TTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAAT- 281614 ||||| || || | ||||| |||| | ||| |||||||| | ||| || | ||| Sbjct 2527 CTCACCTTCAAACACCTGGATCAGTA-CACCAGGCTGATTATCGGCATACGTCGAGAATG 2469 Query 281615 ACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCA 281674 ||| | || ||| || ||| || ||||| | ||| | |||||||| | || Sbjct 2468 ACTGCGACTTCTTTGCAGGGACC-GTAGTGTTGCGTGGAATGAGCTTGGTCATGACTCCG 2410 Query 281675 CCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 281734 || || || || || ||||| || | ||| | ||||| | || | || || || || Sbjct 2409 CCTGCCGTCTCCAATCCAAGCGACAAAGGTGCTACATCCAACAGCAGAAGATCCTGCAGC 2350 Query 281735 TTTTCATCAGTTTGACCAACA---AGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 281791 || | | ||| || ||||| || ||||| | | || ||||| || ||| Sbjct 2349 TTGGAAGAGGCCCCACCGCCACTCAGAATTGCAGCTTGGACGGTCGCTCCATACGCCACA 2290 Query 281792 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 281851 ||||| || ||||||| | | | || || || || || || |||| || | Sbjct 2289 GCTTCGTCCGGATTAATCGACTTAAATAATTCCTTTCCGTTAAAGAAATCGATCAGCAAC 2230 Query 281852 TGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 281911 ||| ||||| || || |||| || || || || | || || |||||||| | | Sbjct 2229 TGTTGCACCTTTGGGATGCGAGTGGAGCCACCGACCAGGACGATCTCATGCACTTCGCCT 2170 Query 281912 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA--GACCAGCTCTAAACA 281969 || ||| || || || ||||||| | || || || | | | || ||| | Sbjct 2169 TTCGACAGCTTCGAGTCGCGCAAAACTTGGGCGACTGGCTCCATTGTCTTGCG--AAAGA 2112 Query 281970 AGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTT 282029 | || | || || || || ||| | |||| |||| || || |||| || || | Sbjct 2111 AATCGGCGCATAGATCCTCAAATCTCGCTCGCGTAATGGTCGTGTTGAAATCGATGCCGT 2052 Query 282030 CGAACAAAGAATCAACTTCAATCGTA-GTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 282088 | | | ||||||| ||||| ||| | ||| | |||| || | | || || || Sbjct 2051 CAAGAAGCGAATCAATCTCAAT-GTACGCTTGCGCAGAAGTGGACAAGGTCCGCTTGGCT 1993 Query 282089 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTT 282146 || || ||||| || | |||| || | ||| | || || | ||| |||| | Sbjct 1992 CGCTCGCATGCCGTACGCAGTCGACGCAGGGCACGT--TGGTTCAACGTCATATCTTTGC 1935 Query 282147 TATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTC 282204 || || | |||||| || ||| | ||| | ||||| || || ||||| ||||| Sbjct 1934 GATGCTTACGCTTGAACTCGGAGACAAA--ATGATCCACAAGGCGGTTGTCAAAGTCTTC 1877 Query 282205 ACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGA 282264 ||| ||||| | || | || | || ||| | || | || | || || |||| Sbjct 1876 ACCGCCCAAATGCGTGTCACCGGCAGTGGCTTTCACCTCAAAGATGCCGTCCTCAATGCT 1817 Query 282265 CAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTT 282324 ||| || | || ||| || || || |||| ||| || || || ||||| ||| Sbjct 1816 CAACAGCGACACGTCAAACGTGCCGCCGCCCAGATCGAAGATTAGCACATTGTGTTCGCC 1757 Query 282325 GTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCT 282384 | | | | || || || || || || | || ||||| ||||| || || ||||| | Sbjct 1756 GCCCT---TCTTGTCCAGGCCGTAGGCGATCGCGGCAGCCGTTGGCTCGTTGATAATACG 1700 Query 282385 CAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTT 282444 || || || | ||||||||| ||| |||||||| || || || | ||| || ||||| Sbjct 1699 CAGCACGTTCAAACCAGCAATGGCTCCAGCATCTTTGGTCGCCTGACGTTGCGAGTCGTT 1640 Query 282445 AAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGC 282504 || |||||||| || || | || |||| | |||| || ||||||||||| || Sbjct 1639 GAAGTATGCAGGGACCGTCACCACTGCATTCCTCACTTGCTTGCCAATATAAGCTTCCGC 1580 Query 282505 TGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--AGAATATTGCTTG 282562 | | ||| || | | | ||| || || || | || || ||| || ||| Sbjct 1579 AATCTCACGCATCTTGATCAGCACCATGGACGAGATCTCCTCAGGCTGGAACCTT--TTG 1522 Query 282563 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC---AACATTAATAACTTTA 282619 | ||| || | | ||||| | | ||||| | | | | | | || || Sbjct 1521 GTCTCACCTTTAAACTGCACTTCCACCTGAGGTTTGTCCGCCGAATCTCGAGTCACCTTG 1462 Query 282620 AATGGCCAATATTTCATATCTGATTGAACACTT-TGG-TCATTAAAATCTCTACCAATTA 282677 || ||||| | ||| || || || || ||||| ||| ||| ||| | | || || | Sbjct 1461 AACGGCCAGTGTTTAATGTCCGACTG--CACTTCTGGATCAGAAAACTTGCGTCCGATCA 1404 Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737 | || || ||||| || | || ||| || || | ||| |||| | || ||||||| Sbjct 1403 AACGCTTGGCATCGAACACCGTGTTGTGTGCGTTCATAGCAACTTGGTTCTTCGCTGCAT 1344 Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797 | ||||||||| | |||| ||| ||||| | ||||| ||||| || ||||| || |||| Sbjct 1343 CACCAATCAGACGCTCTGACTCCGTAAACGCCACATACGATGGCGTCGTGCGGTTTCCTT 1284 Query 282798 GATCATTCGCAATAATTTCAAC 282819 | || ||||||||||| || || Sbjct 1283 GGTCGTTCGCAATAATCTCCAC 1262 >seq3384 Length=3776 Score = 96.9 bits (106), Expect = 3e-14 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 ||||| ||||| || |||| || || ||||| || ||||||||||| | || | | Sbjct 3503 TTATCTAGACCGTAGGCAAGCGCTGCTGCAGTAGGCTCATTAATAATACGTCGTACTTCA 3562 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || || || | || ||||| ||||| || || | || | ||| || || |||||| Sbjct 3563 AGTCCTGCGATCTTACCAGCATCCTTAGTTGCCTGACGCTGCGCATCATTGAAGTATGCA 3622 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTC 282514 || || ||||| || || ||||||||| | ||| | ||| || || | |||| Sbjct 3623 GGTACTGTAATCACAGCTTCTGTTACTGGCTGTCCGAGATATGCTTCCGCATCTGCTTTC 3682 Query 282515 ATTTTACTTAAAATCATTGATGAAATTT 282542 | ||| |||||||||| |||||||| Sbjct 3683 AGCTTAGACAAAATCATTGCTGAAATTT 3710 Score = 86.0 bits (94), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173 ||| |||||| ||||| ||||||||||| || |||||||| || | || || | | Sbjct 3507 CTAGACCGTAGGCAAGCGCTGCTGCAGTAGGCTCATTAATAATACGTCGTACTTCAAGTC 3566 Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 | || || ||| ||| ||| |||||| || | ||| || ||||| || ||||| |||| Sbjct 3567 CTGCGATCTTACCAGCATCCTTAGTTGCCTGACGCTGCGCATCATTGAAGTATGCAGGTA 3626 Query 86234 CAGTAATAACTGCTT 86248 | ||||| || |||| Sbjct 3627 CTGTAATCACAGCTT 3641 >seq432 Length=31072 Score = 96.9 bits (106), Expect = 3e-14 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 432282 TTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCT 432341 ||| | ||||||||||| ||||| | || ||||||||||| |||||||| || | || Sbjct 14462 TTGCGCGGTAAAGAAGGACGTATCCGCGGTAATTTGATGGGCAAGCGTGTAGACTTTTCG 14521 Query 432342 GCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTC 432399 |||||||| |||||||| |||| || |||||||| | | |||| || ||||||| Sbjct 14522 GCACGTACGGTTATTACCGCTGACCCGAATATTGCAATTGACCAAGTGGGCGTTCCTC 14579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740037028475436