Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq5177 226 3e-54 seq7821 125 7e-24 seq4167 95.1 1e-14 >seq5177 Length=2144 Score = 226 bits (250), Expect = 3e-54 Identities = 277/378 (73%), Gaps = 0/378 (0%) Strand=Plus/Minus Query 121982 CATGATGTCGTCAAAGACGATCGACGGGTCTGCCAGGATGTTGCGGATGATGTGGGTGTA 122041 || |||||| ||||| | ||| || || || | ||||||||||||||| |||||||| Sbjct 387 CACGATGTCATCAAAAATGATGGAGGGATCATTGACGATGTTGCGGATGATATGGGTGTA 328 Query 122042 CGAACGAGAGTGAATAGTCTCACTGAACGCCCAAGTCTCCACCCAAGTTTCCAGGGTGGT 122101 ||| || ||||| || ||||| |||||||| || || | ||| ||||| | | Sbjct 327 CGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTTTCTATCCAGGTTTCAATCTCAGG 268 Query 122102 GTCGGATACGATCGGCAGAAGAACTGCGTTCGGGCCACGGCCCTGTACAGAGTCCAGAAG 122161 || || | ||| || | | | |||| |||| ||||||||| | || ||||| || Sbjct 267 CAATGACACCAGCGGTAGCAAAGCCACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAG 208 Query 122162 GATCTGATACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGAAGATTCATGTA 122221 |||| ||||| ||||||||||||||||||||||| || || || || || | || Sbjct 207 CGTCTGGTACTTAAGGTTGCTGATGAAGATGTGCTTTTCATGCTCGGGCAGGCCCTGATA 148 Query 122222 GTCAATTCGGTCACGGGTCACGTTCACCTCTTCCGGACGCCAGAAGAATGCCAGTTGCTT 122281 ||| ||||| | | ||| | |||||||||||||||||||||||||| |||||| || Sbjct 147 ATCAGAACGGTCCTGTGACACATCCACCTCTTCCGGACGCCAGAAGAATGACAGTTGTTT 88 Query 122282 TTCGATCAGCTTTTCGAACTTAGCGTGTTTTTGCTGGTCATAACGAGAAACGTTCGGCGT 122341 |||||||| |||||||| | || ||| ||||||||||| || | ||||| | Sbjct 87 CTCGATCAGTTTTTCGAATACCGGGTATTTCTGCTGGTCATACCGCGCCACGTTGACGGG 28 Query 122342 CTCACCGAGGAACATCGG 122359 || ||| | ||||||||| Sbjct 27 CTGACCAAAGAACATCGG 10 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 121692 AGCATATACTGAGTTCCTGACAAATGCAAGGCTTCATCACGAGCAATTAACTCGATGATG 121751 ||||| | ||| || || | || |||| |||||||||||| ||||| | |||||| Sbjct 710 AGCATGTGCTGGGTGCCGGTCAGGTGCAGGGCTTCATCACGCGCAATCAGGCGGATGATC 651 Query 121752 TTGGTATTGCCCAGCATAACCCCACGCTCACCGAAAGCGAAGGAGCAGGCAAAGCTCACG 121811 |||| ||||| ||| ||| ||||| | || ||||| |||||||| ||||| ||| Sbjct 650 TTGGCGTTGCCTTCCATCACCTTGCGCTCGGCAAAGGCGAATGAGCAGGCGAAGCTGACG 591 Query 121812 TAGAAGCGGATAGCTTCGAG 121831 ||||||||||| ||||| || Sbjct 590 TAGAAGCGGATCGCTTCCAG 571 >seq7821 Length=1406 Score = 125 bits (138), Expect = 7e-24 Identities = 199/284 (70%), Gaps = 10/284 (4%) Strand=Plus/Plus Query 123262 TACCGGGTAGTTCTGGTAGTCCAACAGACGGTCAAGTGAGCGCACCA--AGGTGCGTACC 123319 ||||||||| | ||| || || | ||| || |||| ||||||| |||| | || Sbjct 1105 TACCGGGTAATCCTGATACTCGAGCAGCGCATCCAGTGCACGCACCACCAGGTCGG--CC 1162 Query 123320 GGGCCACGGAGGTCTTCCAGACTCTCTACCTTGCCGAGGTTGATTGCAGACAGCGTACAA 123379 |||| || || ||||| ||| | | || ||||||| || || | |||||| Sbjct 1163 AGGCCTTCCAGTTCGTCCAGTGACTCCAGCGCACCCAGGTTGAAGGCGGATAAGGTACAA 1222 Query 123380 AGTGCAATCTCGCCATCGTCCTCAGGATTTTTGAGGTCATTGATCGCGTGAGTAGGCAGG 123439 || || || ||||| ||| | || || | |||||| | |||| || ||||| Sbjct 1223 AGCGCGATTTCGCCCTCG------GTATCGTTAATGTCATTCAGGGCGTTGGTCGGCAGC 1276 Query 123440 GCAATCTCCATGCACAGGTTGGACTGTTTCACCGGGGCCAGTTCTGGATTGAACGGGCTG 123499 || |||||||||||||||||||| || ||| || || | |||||| ||||||||| Sbjct 1277 GCGATCTCCATGCACAGGTTGGATTGACGCACTGGCGCAACAGCTGGATCAAACGGGCTG 1336 Query 123500 TTGGTGTTGCAGTGGTCAACGTGCTGAATGTAGATGCGTCCTGT 123543 | |||||||| ||||| |||| ||| |||||||| || || || Sbjct 1337 TGCGTGTTGCAATGGTCTACGTTCTGGATGTAGATACGGCCAGT 1380 >seq4167 Length=2817 Score = 95.1 bits (104), Expect = 1e-14 Identities = 240/363 (66%), Gaps = 4/363 (1%) Strand=Plus/Plus Query 124075 ATCGCCGGACTCGATCAATACGCAAGAACTGAACTGTCGTGTCGGAGTACGAACACCCGC 124134 |||||| |||| ||||||||||| || |||||||| ||||| || ||||| ||||| | Sbjct 24 ATCGCCACACTCAATCAATACGCAGGAGCTGAACTGGCGTGTAGGTGTACGCACACCGGA 83 Query 124135 CATGATCGGTGTCGGCAGAGACACCTTCATCAGGGACACGTTCTCGTACAGATCAACGAT 124194 |||||| || || ||||| || | ||| | | ||| ||| ||||| | | ||| Sbjct 84 CATGATAGGGGTAGGCAGGGAAATCTTGAACGTGGAAACGGCATCGTAGAAACGCTTGAT 143 Query 124195 ACGCTCCAGACGAG--TGGCCTTGTCCTCCTTGGACAGAAGGCCCATTGCAATCAGCATC 124252 |||||||| | |||||| | | |||| | |||| ||| || | ||| || Sbjct 144 CAAATCCAGACGCGCCTGGCCT--TTGTAGTTGGCAAACAGGCACATGGCGACCAGGATG 201 Query 124253 AGCGCCATCTGTGGAGATTCGTAAATCTCGCCAGAGACACGGTTCTTGACCAGATACTTG 124312 | | ||| || ||||| |||| | ||| ||||||| ||||| || || Sbjct 202 TACAGGAACTGCGGGCTCTCGTAGATCTTCTTGGTGACGCGGTTCTGCACCAGGTATTTA 261 Query 124313 TCTTCGTACTGACGCATCGCTGCATAAGTGTAGTCGAAGTCACGATCGTGTACGATCTTG 124372 |||| ||| | ||| ||||| | | ||| | || || ||| |||| | | Sbjct 262 CCTTCCAGCTGCTTGACCGCCGCATAGGAGAAGTTCATATCGCGCCAGTGGTCGATATAG 321 Query 124373 CCGTCGAGGAAGTCGATTTCGTCACGGCTGTAGTCTTCCAGCAGGTGACGGTCATACTTC 124432 || | || | |||| ||| ||||||||||| || |||| ||| |||| || || Sbjct 322 CCATTCAGCACATCGAATTCTTCACGGCTGTAATCACGGAGCAAGTGCTGGTCGTATTTG 381 Query 124433 CCA 124435 ||| Sbjct 382 CCA 384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485955373199040