Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq4437 158 4e-33 >seq4437 Length=2594 Score = 158 bits (174), Expect = 4e-33 Identities = 305/449 (68%), Gaps = 1/449 (0%) Strand=Plus/Plus Query 188754 CAAAAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCA 188813 ||||||| | ||| || | | | ||||| || || |||||||||||||| | || || Sbjct 1951 CAAAAAAGC-AATATTTTACTGATAGGCCCGACCGGCTCAGGTAAAACATTGCTGGCACA 2009 Query 188814 AACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGA 188873 |||| |||| || | |||| || | | || ||||||| || | || || || Sbjct 2010 AACACTGGCGCGCCTGCTGGATGTGCCATTTGTGATGGCTGATGCGACCACATTGACTGA 2069 Query 188874 AGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGA 188933 ||| |||||||| |||||||| ||||||||| | ||| || | ||| ||| Sbjct 2070 AGCCGGTTATGTGGGTGAAGACGTGGAAAACATCATGCAGAAATTGCTGCAAAAGTGTGA 2129 Query 188934 TTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGC 188993 |||||| | ||| ||| | ||||| ||||| || || |||||||| || || || | Sbjct 2130 TTACGACGTTGAAAAAGCACAGCGTGGCATTGTTTACATTGATGAAGTCGACAAGATCTC 2189 Query 188994 TAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGC 189053 | ||||| || | |||||||||| || || ||||| || || || || || || || Sbjct 2190 ACGTAAATCCGACAATCCATCCATTACGCGTGACGTATCAGGTGAGGGCGTGCAACAGGC 2249 Query 189054 TTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACA 189113 ||| | || | || ||||| || |||| || ||||| ||||| || || || || Sbjct 2250 TTTGCTTAAGCTGATCGAAGGCACGATTGCTTCTGTGCCTCCGCAAGGCGGCCGCAAGCA 2309 Query 189114 CCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGC 189173 ||| |||| || | || | || || || || || ||| |||| ||| ||||| || Sbjct 2310 CCCGAACCAGGACTTCCTGCAGATCGACACGACCAACATCCTGTTCATTTGCGGTGGCGC 2369 Query 189174 GTTTGATGGTCTTGAAAACATTATCAAGA 189202 || | || || || || | ||| ||| Sbjct 2370 TTTCGCGGGCCTGGAGAAGGTCATCGAGA 2398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591663889689728