Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_023719.1
Length=497513
Score E
Sequences producing significant alignments: (Bits) Value
seq4437 158 4e-33
>seq4437
Length=2594
Score = 158 bits (174), Expect = 4e-33
Identities = 305/449 (68%), Gaps = 1/449 (0%)
Strand=Plus/Plus
Query 188754 CAAAAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCA 188813
||||||| | ||| || | | | ||||| || || |||||||||||||| | || ||
Sbjct 1951 CAAAAAAGC-AATATTTTACTGATAGGCCCGACCGGCTCAGGTAAAACATTGCTGGCACA 2009
Query 188814 AACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGA 188873
|||| |||| || | |||| || | | || ||||||| || | || || ||
Sbjct 2010 AACACTGGCGCGCCTGCTGGATGTGCCATTTGTGATGGCTGATGCGACCACATTGACTGA 2069
Query 188874 AGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGA 188933
||| |||||||| |||||||| ||||||||| | ||| || | ||| |||
Sbjct 2070 AGCCGGTTATGTGGGTGAAGACGTGGAAAACATCATGCAGAAATTGCTGCAAAAGTGTGA 2129
Query 188934 TTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGC 188993
|||||| | ||| ||| | ||||| ||||| || || |||||||| || || || |
Sbjct 2130 TTACGACGTTGAAAAAGCACAGCGTGGCATTGTTTACATTGATGAAGTCGACAAGATCTC 2189
Query 188994 TAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGC 189053
| ||||| || | |||||||||| || || ||||| || || || || || || ||
Sbjct 2190 ACGTAAATCCGACAATCCATCCATTACGCGTGACGTATCAGGTGAGGGCGTGCAACAGGC 2249
Query 189054 TTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACA 189113
||| | || | || ||||| || |||| || ||||| ||||| || || || ||
Sbjct 2250 TTTGCTTAAGCTGATCGAAGGCACGATTGCTTCTGTGCCTCCGCAAGGCGGCCGCAAGCA 2309
Query 189114 CCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGC 189173
||| |||| || | || | || || || || || ||| |||| ||| ||||| ||
Sbjct 2310 CCCGAACCAGGACTTCCTGCAGATCGACACGACCAACATCCTGTTCATTTGCGGTGGCGC 2369
Query 189174 GTTTGATGGTCTTGAAAACATTATCAAGA 189202
|| | || || || || | ||| |||
Sbjct 2370 TTTCGCGGGCCTGGAGAAGGTCATCGAGA 2398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1591663889689728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |