Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_023724.1 Length=62991 Score E Sequences producing significant alignments: (Bits) Value seq5730 86.0 3e-12 seq7083 82.4 3e-11 >seq5730 Length=1907 Score = 86.0 bits (94), Expect = 3e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 52029 ATGCCCGACGCGCACGTCGGCAAAGGTTCGTCTGTTGGTACCGTCATCCCCACCCGCGGC 52088 |||||||||| |||| | ||||| || | | || || | || ||||| |||||||| Sbjct 1488 ATGCCCGACGTGCACCTGGGCAAGGGCGCAACCGTGGGCTCGGTGATCCCGACCCGCGGT 1429 Query 52089 GCAGTCATCCCCGCCGCGGTCGGTGTCGACATCGGCTGCGGCATG 52133 || ||||||| |||||||| || || || ||||||||||||||| Sbjct 1428 GCCATCATCCCGGCCGCGGTTGGCGTGGATATCGGCTGCGGCATG 1384 >seq7083 Length=1548 Score = 82.4 bits (90), Expect = 3e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 595 TAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCC 649 |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1287 TAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCC 1341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201416727322992