Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_023744.1 Length=60588 Score E Sequences producing significant alignments: (Bits) Value seq5730 114 5e-21 >seq5730 Length=1907 Score = 114 bits (126), Expect = 5e-21 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 49383 CGCCGGCCTGCCGTTCGTCCACCCGCATGTGGCGCTGATGCCCGACGCGCACGCCGGCAA 49442 ||||| | | ||||| ||| ||| |||||| |||||||||||| |||| ||||| Sbjct 1525 CGCCGCCGTCCCGTTTGTCGGGCCGTGGGTGGCGGTGATGCCCGACGTGCACCTGGGCAA 1466 Query 49443 GGGTTCATCGGTCGGCACCGTCATCCCGACTATCGACGCCGTGATCCCGGCCGCGGTGGG 49502 ||| || | || ||| | || |||||||| || ||| | |||||||||||||| || Sbjct 1465 GGGCGCAACCGTGGGCTCGGTGATCCCGACCCGCGGTGCCATCATCCCGGCCGCGGTTGG 1406 Query 49503 CGTGGACATCGGCTGCGGGATGATCGCCGCCCGCACCA 49540 |||||| ||||||||||| ||| ||| | ||||||| Sbjct 1405 CGTGGATATCGGCTGCGGCATGGCCGCGGTGCGCACCA 1368 Score = 95.1 bits (104), Expect = 5e-15 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 49753 CAGCTCGGAAGCCTCGGCGGCGGTAACCATTTCATCGAACTATGCCTGGACGAAACCGGC 49812 ||| |||| | || |||||||| ||||| ||||||||||| || |||||||| |||| | Sbjct 1161 CAGATCGGCACGCTGGGCGGCGGCAACCACTTCATCGAACTCTGTCTGGACGAGACCGAC 1102 Query 49813 CGGGTGTGGCTGTTCCTGCACTCCGGGTCGCGTGGCGTCGGCAACAAGATCG 49864 ||||||| || | ||||| ||| ||||||||| ||||||| ||||| Sbjct 1101 GCGGTGTGGGTGATGTTGCACAGCGGCTCGCGTGGCACCGGCAACCTGATCG 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193732191322600