Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_024354.1
Length=149162
Score E
Sequences producing significant alignments: (Bits) Value
seq5177 244 1e-59
seq7821 154 1e-32
seq4015 86.0 6e-12
>seq5177
Length=2144
Score = 244 bits (270), Expect = 1e-59
Identities = 281/378 (74%), Gaps = 0/378 (0%)
Strand=Plus/Minus
Query 118886 CATGATGTCATCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 118945
|| |||||||||||| | ||| || ||||| | |||||| |||||||||||||||||
Sbjct 387 CACGATGTCATCAAAAATGATGGAGGGATCATTGACGATGTTGCGGATGATATGGGTGTA 328
Query 118946 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGT 119005
||||| ||||| || ||||| |||||||| || |||| ||| ||||| | |
Sbjct 327 CGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTTTCTATCCAGGTTTCAATCTCAGG 268
Query 119006 GTCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAG 119065
||||| | ||| |||| | | |||| || | ||||||||| | |||||||| ||
Sbjct 267 CAATGACACCAGCGGTAGCAAAGCCACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAG 208
Query 119066 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTA 119125
|||||||||| ||||||||||||||||||||||| || || || ||||| | ||
Sbjct 207 CGTCTGGTACTTAAGGTTGCTGATGAAGATGTGCTTTTCATGCTCGGGCAGGCCCTGATA 148
Query 119126 GTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTT 119185
|| |||||| | | ||| | || |||||||||||||||||||| | |||||| ||
Sbjct 147 ATCAGAACGGTCCTGTGACACATCCACCTCTTCCGGACGCCAGAAGAATGACAGTTGTTT 88
Query 119186 CTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGT 119245
||||||||| || ||||| | || ||||||||||||||| || | ||||| |
Sbjct 87 CTCGATCAGTTTTTCGAATACCGGGTATTTCTGCTGGTCATACCGCGCCACGTTGACGGG 28
Query 119246 CTCGCCGAGGAACATCGG 119263
|| || | |||||||||
Sbjct 27 CTGACCAAAGAACATCGG 10
Score = 114 bits (126), Expect = 1e-20
Identities = 245/357 (69%), Gaps = 8/357 (2%)
Strand=Plus/Minus
Query 118383 CCAACCGCTCGCATACGCTGGTCGGTGATGTAGTCGATGTAACCGTCCAGCATACCTTTG 118442
||||||| |||||| || ||||||||| || | || | || || |||||
Sbjct 923 CCAACCGAGGCCATACGGCTGTTGGTGATGTATTCAACATACTGGCAGAGGATGTCTTTG 864
Query 118443 TTCAGGCCGATCATCGAACCGTCTTTGAACAGGAAG-CTGCCCCAGTCTTTCTCCTGCAC 118501
|||||||| ||||| || || ||||| |||||| | |||||| | | ||| |||||| |
Sbjct 863 TTCAGGCCTATCATGGAGCCATCTTTAAACAGGTATTCTGCCC-ATTGTTTTTCCTGCTC 805
Query 118502 CGATGCGTCGATAAAGCCCTGTCGTGCCTCT-TCGTAGCAAT-CTTCTGCCA-CACGTGC 118558
| ||| | || | | ||| | || | | ||||| | | || | | || ||
Sbjct 804 GGCGGCGGTTTTGAA--CATCTCGAAACACTCTTGATGCAATTCAGCGGCAATCTCG-GC 748
Query 118559 AAACAGGTCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGAGTTCCGGACAA 118618
||| | | || | |||| |||| || ||||| | ||| || |||| ||
Sbjct 747 GAACTCGGGGTCGTCTTGACCGGAACGCATGATGTTGAGCATGTGCTGGGTGCCGGTCAG 688
Query 118619 ATGCAAGGCTTCATCACGAGCAATCAGTTCAATAATGTTGGTGTTACCCAGCATTACGCC 118678
|||| |||||||||||| |||||||| || || |||| ||| || ||| ||
Sbjct 687 GTGCAGGGCTTCATCACGCGCAATCAGGCGGATGATCTTGGCGTTGCCTTCCATCACCTT 628
Query 118679 GCGCTCACCGAAAGCGAAGGAGCAGGCGAAGCTCACGTAGAAACGGATCGCTTCCAG 118735
|||||| | || ||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 627 GCGCTCGGCAAAGGCGAATGAGCAGGCGAAGCTGACGTAGAAGCGGATCGCTTCCAG 571
>seq7821
Length=1406
Score = 154 bits (170), Expect = 1e-32
Identities = 490/751 (65%), Gaps = 33/751 (4%)
Strand=Plus/Plus
Query 119887 GCAGCATACCCGCTCCGGATTTCTTGAAGGAAATCGCATCACGAGGTGGCTCAAAACCGT 119946
|||| ||||| || ||||| ||||| ||| | | | || ||||| |||| ||| |
Sbjct 648 GCAGGATACCGTCTTTGGATTGCTTGACGGATACCAGGCCGCGCGGTGGTTCAATACCAT 707
Query 119947 TCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCATCATCGTGGACAGCGTAGAGT 120006
| |||| ||||| ||||| ||||| || || | ||||| | || | ||| || ||||
Sbjct 708 TGGTGGCGTTGGCGATCTGGCTGGAGGTTTCTGATGGCATTAACGCAGTCAGGGTGGAGT 767
Query 120007 TACGCAGTCCATGAATAGCGATGTCGATACGCAGCTTTTCCCAATCCATCTTCAGTTCCG 120066
| ||||| |||| | || ||| ||||||| |||||||||||| | || | |
Sbjct 768 TGCGCAGGCCATCTTTTTGAATCTCGGTACGCAGGCTTTCCCAATCCAGCAGCAATGGCT 827
Query 120067 CAGTGTGGAGGCCATCTACCTCTTTCTTGTAACGGTCGATCGGCAGAATGCCCTGAGAGT 120126
| || | | |||| | || || || || || |||||||| || || | | ||
Sbjct 828 CGCTGCAAACGGCATCCAGATCCTTTTTATAGGTATCAATCGGCAGGATACCTTTGGCGT 887
Query 120127 AAGTGGTCTCGTGGAAGAGATCACATTTACCCAATTCTTTTGCCAGGTCAACCGACGCTT 120186
||||||| || ||||| | ||| || || || | ||| | ||||| || |
Sbjct 888 AAGTGGTTTCCTGGAACGCGCCGCATGGGCCAAACTCACGCGACAGTTGTACCGAAGCCT 947
Query 120187 CCAGTAGGTAATACTGGAATGCTTCAGCCAGTTCGTGAACAGCGTTCGCTGCACGAGGGT 120246
|| ||||| |||||| |||||| || ||| ||||| | || | | | |
Sbjct 948 TGAGCAGGTAGAACTGGATCGCTTCAA--AG---GTGCGGTGCGTTAG--GCCCAACGCT 1000
Query 120247 ----CGCTG---TATTTCAGGCCACGCTTCGCCAGGTAGTATGCTAAGTTGGTCCAGCCA 120299
||||| || || ||| ||||||||||| || || ||||| | |||
Sbjct 1001 TCATCGCTGGTGTAGTTAGTGCCGTTTTTCGCCAGGTAATACGCGTAGTTGATTACGCCT 1060
Query 120300 ATACCCAGAGTACGTCGCAGTTTAGTCTT-----CTCTGCC--GCCAGAACCGGATAGTT 120352
| ||||| | ||| || || ||| ||| || || ||||| || |
Sbjct 1061 ACGCCCAGTGAACGGCG----TTTGTCGGTGGCACTCAGCGCGGCTTTTACCGGGTAATC 1116
Query 120353 CTGATAATCTAACAGACGATCCAATGCACGAACCAGT-GTACGGACAGGCTCACGCATGT 120411
|||||| || | ||| ||||| |||||| |||| | ||| ||||| | || |
Sbjct 1117 CTGATACTCGAGCAGCGCATCCAGTGCACGCACCACCAGGTCGGCCAGGCCTTC-CAGTT 1175
Query 120412 CTTCCAGCTTCTCCACCTTGCCGAGGTTGATGGCAGACAGAGTACACAGGGCCACTTCCC 120471
| ||||| ||||| | || ||||||| ||| || | ||||| || || | ||| |
Sbjct 1176 CGTCCAGTGACTCCAGCGCACCCAGGTTGAAGGCGGATAAGGTACAAAGCGCGATTTCGC 1235
Query 120472 CCGGGTCGTTCGGGTCATTAATGTCCGTAATCGGATGTGTCGGCAGGGCGATTTCCATGC 120531
|| ||| | || |||||||| | | | | |||||||| ||||| |||||||
Sbjct 1236 CC---TCGGTA---TCGTTAATGTCATTCAGGGCGTTGGTCGGCAGCGCGATCTCCATGC 1289
Query 120532 ACAGGTTGGACTGTTTCACCGGGGCCTGTTCGGGGTCGAACGGGCTATTAGTGTTGCAGT 120591
|||||||||| || ||| || || | || || |||||||| | |||||||| |
Sbjct 1290 ACAGGTTGGATTGACGCACTGGCGCAACAGCTGGATCAAACGGGCTGTGCGTGTTGCAAT 1349
Query 120592 GGTCAACGTGCTGCACGTAAATACGGCCTGT 120622
|||| |||| ||| | ||| |||||||| ||
Sbjct 1350 GGTCTACGTTCTGGATGTAGATACGGCCAGT 1380
>seq4015
Length=2969
Score = 86.0 bits (94), Expect = 6e-12
Identities = 202/299 (68%), Gaps = 6/299 (2%)
Strand=Plus/Minus
Query 111914 GCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGG- 111972
||||| || |||||||| ||||| || ||||| | || ||||| | || || |||||
Sbjct 323 GCGATGGCGTTAATGGTGAAGTCACGTCGGGCGAGGTCTTCTTCTAGCGTGACTTCTGGC 264
Query 111973 GCTGAACATCACCTCGAAATCGTGG-TATCCTGCGCCAGTTGAACGCTCGGTACGGGCCA 112031
|| | ||| | | ||| | | || ||| ||| ||| ||||| || || ||||
Sbjct 263 GCGG--CATAGACACTAAAGCCTTTATAGCCTTTGCCGGTTTTGCGCTCAGTGCGCGCCA 206
Query 112032 GGGCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAATGCGGCACCGACTTGCT 112091
| || | |||| || || |||||||||||| | || ||||| | ||||| ||
Sbjct 205 GTGCATGTTCTTGCTGCGTGTCAGGATGCAGGAATACCGGGAAATCCTTGCCGAC-CGCG 147
Query 112092 C-GAAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTCT 112150
| | | || |||| ||||| || | |||| ||||| ||||| || || || |||
Sbjct 146 CGGTAACCTGCCGCCAGCATCTGCTCAGGCGTGGCACCGACGACAACATAATCGCGATCT 87
Query 112151 TTGCTCTCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGACCAGATAGATTTTCAT 112209
||| | | || | ||| |||| || || || ||||| ||| | |||||| ||||
Sbjct 86 TTGACCGGCAGGCCTAGCAGGCCATCACGCACGGCACCGCCTACCTGGTAGATTCTCAT 28
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477118308460320
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