Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq5177 244 1e-59 seq7821 154 1e-32 seq4015 86.0 6e-12 >seq5177 Length=2144 Score = 244 bits (270), Expect = 1e-59 Identities = 281/378 (74%), Gaps = 0/378 (0%) Strand=Plus/Minus Query 118886 CATGATGTCATCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 118945 || |||||||||||| | ||| || ||||| | |||||| ||||||||||||||||| Sbjct 387 CACGATGTCATCAAAAATGATGGAGGGATCATTGACGATGTTGCGGATGATATGGGTGTA 328 Query 118946 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGT 119005 ||||| ||||| || ||||| |||||||| || |||| ||| ||||| | | Sbjct 327 CGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTTTCTATCCAGGTTTCAATCTCAGG 268 Query 119006 GTCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAG 119065 ||||| | ||| |||| | | |||| || | ||||||||| | |||||||| || Sbjct 267 CAATGACACCAGCGGTAGCAAAGCCACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAG 208 Query 119066 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTA 119125 |||||||||| ||||||||||||||||||||||| || || || ||||| | || Sbjct 207 CGTCTGGTACTTAAGGTTGCTGATGAAGATGTGCTTTTCATGCTCGGGCAGGCCCTGATA 148 Query 119126 GTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTT 119185 || |||||| | | ||| | || |||||||||||||||||||| | |||||| || Sbjct 147 ATCAGAACGGTCCTGTGACACATCCACCTCTTCCGGACGCCAGAAGAATGACAGTTGTTT 88 Query 119186 CTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGT 119245 ||||||||| || ||||| | || ||||||||||||||| || | ||||| | Sbjct 87 CTCGATCAGTTTTTCGAATACCGGGTATTTCTGCTGGTCATACCGCGCCACGTTGACGGG 28 Query 119246 CTCGCCGAGGAACATCGG 119263 || || | ||||||||| Sbjct 27 CTGACCAAAGAACATCGG 10 Score = 114 bits (126), Expect = 1e-20 Identities = 245/357 (69%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 118383 CCAACCGCTCGCATACGCTGGTCGGTGATGTAGTCGATGTAACCGTCCAGCATACCTTTG 118442 ||||||| |||||| || ||||||||| || | || | || || ||||| Sbjct 923 CCAACCGAGGCCATACGGCTGTTGGTGATGTATTCAACATACTGGCAGAGGATGTCTTTG 864 Query 118443 TTCAGGCCGATCATCGAACCGTCTTTGAACAGGAAG-CTGCCCCAGTCTTTCTCCTGCAC 118501 |||||||| ||||| || || ||||| |||||| | |||||| | | ||| |||||| | Sbjct 863 TTCAGGCCTATCATGGAGCCATCTTTAAACAGGTATTCTGCCC-ATTGTTTTTCCTGCTC 805 Query 118502 CGATGCGTCGATAAAGCCCTGTCGTGCCTCT-TCGTAGCAAT-CTTCTGCCA-CACGTGC 118558 | ||| | || | | ||| | || | | ||||| | | || | | || || Sbjct 804 GGCGGCGGTTTTGAA--CATCTCGAAACACTCTTGATGCAATTCAGCGGCAATCTCG-GC 748 Query 118559 AAACAGGTCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGAGTTCCGGACAA 118618 ||| | | || | |||| |||| || ||||| | ||| || |||| || Sbjct 747 GAACTCGGGGTCGTCTTGACCGGAACGCATGATGTTGAGCATGTGCTGGGTGCCGGTCAG 688 Query 118619 ATGCAAGGCTTCATCACGAGCAATCAGTTCAATAATGTTGGTGTTACCCAGCATTACGCC 118678 |||| |||||||||||| |||||||| || || |||| ||| || ||| || Sbjct 687 GTGCAGGGCTTCATCACGCGCAATCAGGCGGATGATCTTGGCGTTGCCTTCCATCACCTT 628 Query 118679 GCGCTCACCGAAAGCGAAGGAGCAGGCGAAGCTCACGTAGAAACGGATCGCTTCCAG 118735 |||||| | || ||||| |||||||||||||| |||||||| |||||||||||||| Sbjct 627 GCGCTCGGCAAAGGCGAATGAGCAGGCGAAGCTGACGTAGAAGCGGATCGCTTCCAG 571 >seq7821 Length=1406 Score = 154 bits (170), Expect = 1e-32 Identities = 490/751 (65%), Gaps = 33/751 (4%) Strand=Plus/Plus Query 119887 GCAGCATACCCGCTCCGGATTTCTTGAAGGAAATCGCATCACGAGGTGGCTCAAAACCGT 119946 |||| ||||| || ||||| ||||| ||| | | | || ||||| |||| ||| | Sbjct 648 GCAGGATACCGTCTTTGGATTGCTTGACGGATACCAGGCCGCGCGGTGGTTCAATACCAT 707 Query 119947 TCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCATCATCGTGGACAGCGTAGAGT 120006 | |||| ||||| ||||| ||||| || || | ||||| | || | ||| || |||| Sbjct 708 TGGTGGCGTTGGCGATCTGGCTGGAGGTTTCTGATGGCATTAACGCAGTCAGGGTGGAGT 767 Query 120007 TACGCAGTCCATGAATAGCGATGTCGATACGCAGCTTTTCCCAATCCATCTTCAGTTCCG 120066 | ||||| |||| | || ||| ||||||| |||||||||||| | || | | Sbjct 768 TGCGCAGGCCATCTTTTTGAATCTCGGTACGCAGGCTTTCCCAATCCAGCAGCAATGGCT 827 Query 120067 CAGTGTGGAGGCCATCTACCTCTTTCTTGTAACGGTCGATCGGCAGAATGCCCTGAGAGT 120126 | || | | |||| | || || || || || |||||||| || || | | || Sbjct 828 CGCTGCAAACGGCATCCAGATCCTTTTTATAGGTATCAATCGGCAGGATACCTTTGGCGT 887 Query 120127 AAGTGGTCTCGTGGAAGAGATCACATTTACCCAATTCTTTTGCCAGGTCAACCGACGCTT 120186 ||||||| || ||||| | ||| || || || | ||| | ||||| || | Sbjct 888 AAGTGGTTTCCTGGAACGCGCCGCATGGGCCAAACTCACGCGACAGTTGTACCGAAGCCT 947 Query 120187 CCAGTAGGTAATACTGGAATGCTTCAGCCAGTTCGTGAACAGCGTTCGCTGCACGAGGGT 120246 || ||||| |||||| |||||| || ||| ||||| | || | | | | Sbjct 948 TGAGCAGGTAGAACTGGATCGCTTCAA--AG---GTGCGGTGCGTTAG--GCCCAACGCT 1000 Query 120247 ----CGCTG---TATTTCAGGCCACGCTTCGCCAGGTAGTATGCTAAGTTGGTCCAGCCA 120299 ||||| || || ||| ||||||||||| || || ||||| | ||| Sbjct 1001 TCATCGCTGGTGTAGTTAGTGCCGTTTTTCGCCAGGTAATACGCGTAGTTGATTACGCCT 1060 Query 120300 ATACCCAGAGTACGTCGCAGTTTAGTCTT-----CTCTGCC--GCCAGAACCGGATAGTT 120352 | ||||| | ||| || || ||| ||| || || ||||| || | Sbjct 1061 ACGCCCAGTGAACGGCG----TTTGTCGGTGGCACTCAGCGCGGCTTTTACCGGGTAATC 1116 Query 120353 CTGATAATCTAACAGACGATCCAATGCACGAACCAGT-GTACGGACAGGCTCACGCATGT 120411 |||||| || | ||| ||||| |||||| |||| | ||| ||||| | || | Sbjct 1117 CTGATACTCGAGCAGCGCATCCAGTGCACGCACCACCAGGTCGGCCAGGCCTTC-CAGTT 1175 Query 120412 CTTCCAGCTTCTCCACCTTGCCGAGGTTGATGGCAGACAGAGTACACAGGGCCACTTCCC 120471 | ||||| ||||| | || ||||||| ||| || | ||||| || || | ||| | Sbjct 1176 CGTCCAGTGACTCCAGCGCACCCAGGTTGAAGGCGGATAAGGTACAAAGCGCGATTTCGC 1235 Query 120472 CCGGGTCGTTCGGGTCATTAATGTCCGTAATCGGATGTGTCGGCAGGGCGATTTCCATGC 120531 || ||| | || |||||||| | | | | |||||||| ||||| ||||||| Sbjct 1236 CC---TCGGTA---TCGTTAATGTCATTCAGGGCGTTGGTCGGCAGCGCGATCTCCATGC 1289 Query 120532 ACAGGTTGGACTGTTTCACCGGGGCCTGTTCGGGGTCGAACGGGCTATTAGTGTTGCAGT 120591 |||||||||| || ||| || || | || || |||||||| | |||||||| | Sbjct 1290 ACAGGTTGGATTGACGCACTGGCGCAACAGCTGGATCAAACGGGCTGTGCGTGTTGCAAT 1349 Query 120592 GGTCAACGTGCTGCACGTAAATACGGCCTGT 120622 |||| |||| ||| | ||| |||||||| || Sbjct 1350 GGTCTACGTTCTGGATGTAGATACGGCCAGT 1380 >seq4015 Length=2969 Score = 86.0 bits (94), Expect = 6e-12 Identities = 202/299 (68%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 111914 GCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGG- 111972 ||||| || |||||||| ||||| || ||||| | || ||||| | || || ||||| Sbjct 323 GCGATGGCGTTAATGGTGAAGTCACGTCGGGCGAGGTCTTCTTCTAGCGTGACTTCTGGC 264 Query 111973 GCTGAACATCACCTCGAAATCGTGG-TATCCTGCGCCAGTTGAACGCTCGGTACGGGCCA 112031 || | ||| | | ||| | | || ||| ||| ||| ||||| || || |||| Sbjct 263 GCGG--CATAGACACTAAAGCCTTTATAGCCTTTGCCGGTTTTGCGCTCAGTGCGCGCCA 206 Query 112032 GGGCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAATGCGGCACCGACTTGCT 112091 | || | |||| || || |||||||||||| | || ||||| | ||||| || Sbjct 205 GTGCATGTTCTTGCTGCGTGTCAGGATGCAGGAATACCGGGAAATCCTTGCCGAC-CGCG 147 Query 112092 C-GAAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTCT 112150 | | | || |||| ||||| || | |||| ||||| ||||| || || || ||| Sbjct 146 CGGTAACCTGCCGCCAGCATCTGCTCAGGCGTGGCACCGACGACAACATAATCGCGATCT 87 Query 112151 TTGCTCTCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGACCAGATAGATTTTCAT 112209 ||| | | || | ||| |||| || || || ||||| ||| | |||||| |||| Sbjct 86 TTGACCGGCAGGCCTAGCAGGCCATCACGCACGGCACCGCCTACCTGGTAGATTCTCAT 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477118308460320