Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_024360.1 Length=138036 Score E Sequences producing significant alignments: (Bits) Value seq4439 105 6e-18 >seq4439 Length=2591 Score = 105 bits (116), Expect = 6e-18 Identities = 258/391 (66%), Gaps = 0/391 (0%) Strand=Plus/Minus Query 105011 CATGCTATTACTGCTATCATTGCACAACAAGAAGCTATTCATAACGAAAGCTACTCTTAT 105070 ||||| | | | || ||||| | || || |||| || |||||||| |||||| || Sbjct 2583 CATGCCAATGCCGCGATCATCGGCCAGCAGGAAGTGATCCATAACGAGAGCTACAGCTAC 2524 Query 105071 GTACTTGCTTCTATTACTAACTTACAGGAGCAGAATCGAGTATTTGAGGAAGCTAGAACA 105130 || || || || || || | | || ||||| || || || ||| || | || Sbjct 2523 GTGCTGGCCTCGATCACCGGCCTGGCCGATCAGAACCGCGTGTTCGAGCTTGCGCGCACG 2464 Query 105131 CACCCTACGATTATTAAACGTAATGCACCTATTATGGAGTCTTATGACGATTTCATGAAT 105190 ||||| || || || || || ||||| || || |||| | || ||||| ||| || Sbjct 2463 CACCCGACCATCATCAAGCGCAATGCGCCGATCATGGGCGCCTACGACGACTTCCTGCGC 2404 Query 105191 AATAAAACACCTGAGAATATGGTAAAAGCTTTAGTACAATCATCTATCTTAGAGGGTATT 105250 | || || | || | || | || | | || || || ||| | || || || Sbjct 2403 GACAAGACCGCCGAAACGCTGATCCGCGCGCTGATCCAGTCCTCGATCCTGGAAGGCATC 2344 Query 105251 AATTTCTACAGCGGTTTTGCTTACTTCTATAACCTCGTTCGTCAAAACAAGATGACAGGG 105310 || ||||| ||| ||||| || ||||| || || || || || ||| ||||| || Sbjct 2343 AACTTCTATTCCGGCTTTGCGTATTTCTACAATCTGGTCCGCCAGAACCGCATGACCGGC 2284 Query 105311 ACAGGTAAAATCATCAGCTTCATTAATCGTGATGAGTTAGCCCATTCGAAGTTTATTTCT 105370 || || || || ||||||||||| || || |||||| | || ||||| ||||| || Sbjct 2283 ACCGGCAAGATTATCAGCTTCATCAACCGCGATGAGCTGGCGCATTCCAAGTTCATCAGC 2224 Query 105371 GAGCTAATTAGAGCTATTGTAGGGGAAAACC 105401 ||||| ||| | || || | || || |||| Sbjct 2223 GAGCTGATTCGCGCCATCATCGGCGAGAACC 2193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441520487213760