Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_024364.1 Length=131952 Score E Sequences producing significant alignments: (Bits) Value seq4439 91.5 1e-13 seq6608 86.0 5e-12 >seq4439 Length=2591 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 38004 TCATCGAACCCATTATCTAAATTTGTTTTCTTGTAACTAGAGTTACGCATTTCGAAAAAG 38063 || |||||||||||||| |||| || |||||||| | || ||||| ||||| ||| Sbjct 1940 TCGTCGAACCCATTATCCGAATTGGTCTTCTTGTACGACGCATTGCGCATCTCGAAGAAG 1999 Query 38064 TCGGTTTTTGTTTCTGTAAAGTTATCGGCGTAAGCTTTAATCCATGTCAT 38113 ||||| || ||||| || ||||| |||||||| || || ||||| | ||| Sbjct 2000 TCGGTCTTGGTTTCGGTGAAGTTGTCGGCGTAGGCCTTGATCCACGGCAT 2049 >seq6608 Length=1660 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 38834 GTTGTACTGTTTGGCATCGCTCTTCATATCTACCTCATCAGGCAACCAGTAATTTGTAGT 38893 ||||||||| ||||||| |||||| || ||||| || || | |||| | || || | Sbjct 1593 GTTGTACTGGCGCGCATCGCCCTTCATGTCCACCTCGTCGGGGATCCAGAAGTTGGTCGA 1534 Query 38894 TAACTCTTTGTAAGCTCGATAGAAAGATGGATACCGAATATCGTTCCAGTTTACGATACC 38953 | ||| ||||| || |||||||| || || ||| |||| ||||||||||| | ||| || Sbjct 1533 CAGCTCCTTGTACGCCCGATAGAAGGACGGGTACGGAATGTCGTTCCAGTTGAGGATGCC 1474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422059422279798