Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1324 138 2e-27 seq151 122 2e-22 seq2192 105 1e-17 >seq1324 Length=13147 Score = 138 bits (152), Expect = 2e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || || || || || || || | | ||||||||| ||||| || || |||||||| Sbjct 2106 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2165 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTC 82741 || | || || || ||||| || ||||||||||| |||||||| ||| || ||||| || Sbjct 2166 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGC-TTCACATTGTC 2224 Query 82742 AATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 ||| | || || || || |||| || ||||||||||||||||||||||| ||||| Sbjct 2225 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAAA 2284 Query 82802 TATCTGCATTATT 82814 |||||||| ||| Sbjct 2285 GATCTGCATGATT 2297 >seq151 Length=51439 Score = 122 bits (134), Expect = 2e-22 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | |||||| || || || ||||| || || || ||| || | | ||| Sbjct 38058 CGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGCGTACGGCCG 38117 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || |||||||| || | || || || || || || || ||||| Sbjct 38118 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 38177 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||||| ||||| ||||||| ||| || || || |||| || || Sbjct 38178 TCCTGGATCTTCTGCTTC-ACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTAAT 38236 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| |||||||||||||| || || |||||||| Sbjct 38237 CGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38272 Score = 116 bits (128), Expect = 7e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | |||||| || || || ||||| || || || || || | | ||| Sbjct 38286 CGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 38345 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || |||||||| || | || || || || || || || ||||| Sbjct 38346 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 38405 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||||| ||||| ||||||| ||| || || || |||| || || Sbjct 38406 TCCTGGATCTTCTGCTTC-ACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGAT 38464 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| |||||||||||||| || || |||||||| Sbjct 38465 CGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38500 >seq2192 Length=7014 Score = 105 bits (116), Expect = 1e-17 Identities = 252/381 (66%), Gaps = 0/381 (0%) Strand=Plus/Minus Query 198177 AGAAGAGAACTGTCGGATAATTTTTGTTACTATAATAAACATTACGATAGCGTACAGTCT 198236 ||| |||| || | || || ||||| ||||| ||| ||||| ||||| | || Sbjct 6872 AGACGAGAGCTAGCTGACAACTTTTGCTACTACAATCCTCATTATGATAGTTTTGAGGGA 6813 Query 198237 ACTCACGCATGGGCTAGAAGAACATTAGAAGATCACATTAATGATCCTAGAAAGTATATC 198296 || |||||||| | || ||| || || || || |||| || ||| || | Sbjct 6812 TTTCCGGCATGGGCAAAAAAGACACTACTCGAGCATATAGATGACCCAAGATCACATCTG 6753 Query 198297 TATTCTATTAAACAACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAA 198356 |||||| || || ||||| || | || ||||| ||||| |||||||| | || Sbjct 6752 TATTCTCAGGAAGAATTCGAAGCAGCAAAGACGCATGATCCTCTGTGGAATGCCACTCAG 6693 Query 198357 ATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAG 198416 | ||||| ||| | ||| || |||||| | | | || | ||||||||||| || || Sbjct 6692 CTGGAGATGGTAAAACGAGGCAAGATGCATGGCTATATACGTATGTACTGGGCGAAGAAA 6633 Query 198417 ATACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTATAGTATCTATCTAAACAAT 198476 | | |||||||| | ||| ||||| | ||| | | | || ||||| || || Sbjct 6632 CTTTTGGAATGGACCAAAACTCCGGAGGTCGCCCTTCGCATCGGGATATATCTCAATGAT 6573 Query 198477 AAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGC 198536 || ||||| ||||| || |||||| || ||||| || || | |||||||| | Sbjct 6572 AAATACGAGCTAGATGGTCGGGATCCCAATGGATATGTGGGCTTAGCATGGTCTATAGGA 6513 Query 198537 GGATTACATGATCGAGCGTGG 198557 || | || ||| |||| ||| Sbjct 6512 GGCGTGCACGATAGAGCTTGG 6492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981675162217154