Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq2192 132 9e-26 >seq2192 Length=7014 Score = 132 bits (146), Expect = 9e-26 Identities = 285/426 (67%), Gaps = 0/426 (0%) Strand=Plus/Minus Query 182854 ATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAATAAACATTACGATAGTGTT 182913 || || ||| |||| ||| | || || ||||| ||||| ||| ||||| |||||| || Sbjct 6878 ATCGTGAGACGAGAGCTAGCTGACAACTTTTGCTACTACAATCCTCATTATGATAGTTTT 6819 Query 182914 CAGTCTACTCACGCATGGGCTAGAAGAACATTAGAAGATCACGTTAATGATCCTAGAAAG 182973 || || |||||||| | || ||| || || || | |||| || ||| Sbjct 6818 GAGGGATTTCCGGCATGGGCAAAAAAGACACTACTCGAGCATATAGATGACCCAAGATCA 6759 Query 182974 TATATCTATTCTATTAAACAACTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCA 183033 || | |||||| || || ||||| ||| | || ||||| ||||| |||||||| Sbjct 6758 CATCTGTATTCTCAGGAAGAATTCGAAGCAGCAAAGACGCATGATCCTCTGTGGAATGCC 6699 Query 183034 TCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCT 183093 | || | ||||| | | | ||| || |||||| | | | |||| ||||||||||| Sbjct 6698 ACTCAGCTGGAGATGGTAAAACGAGGCAAGATGCATGGCTATATACGTATGTACTGGGCG 6639 Query 183094 AAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTATAGTATCTATATG 183153 || || | | |||||||| | ||||||||| | || | | | || ||| | Sbjct 6638 AAGAAACTTTTGGAATGGACCAAAACTCCGGAGGTCGCCCTTCGCATCGGGATATATCTC 6579 Query 183154 AACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCT 183213 || |||| ||||| ||||| ||| |||||| || ||||| || || | |||||| Sbjct 6578 AATGATAAATACGAGCTAGATGGTCGGGATCCCAATGGATATGTGGGCTTAGCATGGTCT 6519 Query 183214 ATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATAT 183273 || | || | ||||||||||| ||| || | | |||| ||||| || | || Sbjct 6518 ATAGGAGGCGTGCACGATAGAGCTTGGTTTGAGCGGGATGTATTCGGAAAAATCCGCTAC 6459 Query 183274 ATGAAT 183279 |||||| Sbjct 6458 ATGAAT 6453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903274717152960