Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq75 172 5e-38
seq151 140 3e-28
seq732 132 5e-26
seq1324 104 2e-17
>seq75
Length=61118
Score = 172 bits (190), Expect = 5e-38
Identities = 384/573 (67%), Gaps = 5/573 (1%)
Strand=Plus/Plus
Query 147954 CGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGAC 148013
|||| || ||||| ||||||||||| ||| | ||| ||||| ||||| ||||| |
Sbjct 20490 CGCATGTAATACATACCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGACGTC 20549
Query 148014 ATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCAATGAAC 148073
| || |||||| | || | | | ||| | ||||||||||||| |||| ||
Sbjct 20550 AGCTTACTGATCGTCGGATCCGCAATATGAATATTGAGCGACTGGCTCTGGCAAATGTAC 20609
Query 148074 GCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCCGTCTT 148132
|||||||| ||||| | | || | || ||| || | ||| || ||||| | |||||
Sbjct 20610 GCGCCACGATCAGCCGAGAGATCCAAGA-TCGACTTCTGCTTAATTTCCCACACTGTCTT 20668
Query 148133 GTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGTGCGC 148192
|||| ||||| || || || ||| | | ||||| ||||| | ||
Sbjct 20669 GTACTTTTCCTTGACATCATTCGGGATGGTCTTAACCTTTTGCACGGAGCCACCGTCGTT 20728
Query 148193 AAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGATCAG 148252
| ||| || ||||| | |||| ||| | | | || || |||| || | |||||
Sbjct 20729 CAGAATTTGGTTGCGGACTTCGGGCGTCCAGATGCCCAGGTCAATCAATTCCTTCATCAG 20788
Query 148253 ATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGT 148312
|||| || || | | ||||||||| || |||||||| || |||| || |||
Sbjct 20789 GTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGGTTGTACATATTCGACGT 20848
Query 148313 AAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTA 148372
|||| |||| ||||||||||||||||| |||||| || |||| ||||| |||||
Sbjct 20849 GTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCGGCATTGG 20908
Query 148373 CGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCA 148432
||| || ||||| |||||||| | || || | | || ||||| ||| |||
Sbjct 20909 CGCCACGAGCAGAGAGTTGCGAATGCCATACTTGATCACGTTCTCCTTCAACTCCGTCCA 20968
Query 148433 GTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCT 148489
|||||| || | |||||| || ||| |||||||||| |||| | || || |||
Sbjct 20969 GTCCCAAAGACCTGACGACGGCGTGACGCCCCACATGTCGAACTGGAAGATCCCCTTGCT 21028
Query 148490 AGCGGGGCTGCCCTCGTACGAGCTGTACGGTCC 148522
|| || ||||| | ||| |||||| ||
Sbjct 21029 CGCTGGAGAGCCCTGGAACGTCTCGTACGGACC 21061
>seq151
Length=51439
Score = 140 bits (154), Expect = 3e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||| ||||| || ||||| |||| || |||| ||| || |||||||||||
Sbjct 38304 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTGCCG 38363
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
|| | || |||||||||||||| || |||||||| |||||||| |||||| |||||
Sbjct 38364 GCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 38423
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | |||| || ||| | ||||||||||| | |||| || || || |||| ||
Sbjct 38424 ACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACGTC 38483
Query 133644 TTTACGAAAATCTGCAT 133660
|| ||||||||||||||
Sbjct 38484 TTCACGAAAATCTGCAT 38500
Score = 131 bits (144), Expect = 2e-25
Identities = 150/200 (75%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
|| ||||| ||||| || ||||| || | || ||| ||| ||| || ||||||||||
Sbjct 38076 GTCGACTCCTTCTGGATGTTGTAGTCACTCAGCGT--ACGGCCGTCTTCCAGCTGCTTGC 38133
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || |||||||||||||| || |||||||| |||||||| |||||| ||||
Sbjct 38134 CGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCT 38193
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | |||| || ||| | ||||||||||| | || | || || || |||| |
Sbjct 38194 TCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTAATCGTCTTCCCTGTCAACG 38253
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || |||||||||||||||
Sbjct 38254 TCTTCACGAAAATCTGCATG 38273
>seq732
Length=22061
Score = 132 bits (146), Expect = 5e-26
Identities = 499/768 (65%), Gaps = 21/768 (3%)
Strand=Plus/Plus
Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413
||||||||| || || ||||| |||||||| || ||||||| | ||| || ||| |||
Sbjct 8677 GTACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCAT 8736
Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACT-GTACGAGCAGTC 120472
| || || ||||| | || | || |||| | ||| | | |||| | ||| |
Sbjct 8737 CCAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAGTACAA-CAGGC 8795
Query 120473 GGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCA 120532
|||||||||||||||||||||||| ||||||| | || ||||||||| | || | | |
Sbjct 8796 GGTCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAA 8855
Query 120533 CCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGA 120592
| |||| || | | |||||| | ||| || ||| || || | || | |
Sbjct 8856 CGGGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGAATGATCGTGT 8915
Query 120593 GCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTAC---AGGCACGCAA 120649
| | || |||||| || ||||| | || | | ||||| ||||||||||
Sbjct 8916 GGACGCGGTCCTCGGGCAGCT--TGTTC-ACTAGCTT---GGAGTACATGAGGCACGCAA 8969
Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709
|||||||||||| |||||| || || || |||||||| || | ||||| ||||
Sbjct 8970 AGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 9029
Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769
||| || | |||| | | || || | | || |||||| ||||| | ||| |
Sbjct 9030 TGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTT 9089
Query 120770 CCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG-CTGTCGATCCAC 120828
| || |||||| || | || ||||| || ||| | |||| |||| ||||
Sbjct 9090 CGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGAAG-ATACTTGTGGGTCGCACCAC 9148
Query 120829 TTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGC 120888
|| | ||||| | ||| || || || || ||||| || ||| | |||| ||| ||
Sbjct 9149 TTGAGCGCCCAATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGG 9208
Query 120889 ATGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTG 120948
|| ||| | |||| ||| | | |||||||| || | ||||| |
Sbjct 9209 TGATCCTTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAG 9268
Query 120949 TGCACGCACTCGATCAGCACTTGCTGGTTG---TAAAAGTACTGCGCCTCCAGCTCGGGC 121005
|| | | || ||| || | |||| | |||||| || | || ||| || | ||
Sbjct 9269 TGGATGTTTTCAATC-GCGAT--CTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGC 9325
Query 121006 ACCGC-CCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAA 121064
|| | ||| | || | | || || ||||| || | || ||| || ||
Sbjct 9326 ACTTCATTGCT-AAAGTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAA 9384
Query 121065 GAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTT 121112
||| || ||||| |||||||||||||| ||||| | ||||||||| ||
Sbjct 9385 GAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTT 9432
>seq1324
Length=13147
Score = 104 bits (114), Expect = 2e-17
Identities = 117/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
||| || || |||||||| || | || || ||||||||||| ||||| |||||||||||
Sbjct 2138 GTCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTT 2197
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
|| ||||| ||||| | | |||| |||||| ||||||||||| | ||||
Sbjct 2198 ATCCTGAATCTTCTGCTTCACATTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGAT 2257
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661
|| ||||| |||| || || || || |||||||||
Sbjct 2258 CGTCTTGCCTGTCAACGTCTTCACAAAGATCTGCATG 2294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483347767202640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |