Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq75 172 5e-38 seq151 140 3e-28 seq732 132 5e-26 seq1324 104 2e-17 >seq75 Length=61118 Score = 172 bits (190), Expect = 5e-38 Identities = 384/573 (67%), Gaps = 5/573 (1%) Strand=Plus/Plus Query 147954 CGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGAC 148013 |||| || ||||| ||||||||||| ||| | ||| ||||| ||||| ||||| | Sbjct 20490 CGCATGTAATACATACCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGACGTC 20549 Query 148014 ATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCAATGAAC 148073 | || |||||| | || | | | ||| | ||||||||||||| |||| || Sbjct 20550 AGCTTACTGATCGTCGGATCCGCAATATGAATATTGAGCGACTGGCTCTGGCAAATGTAC 20609 Query 148074 GCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCCGTCTT 148132 |||||||| ||||| | | || | || ||| || | ||| || ||||| | ||||| Sbjct 20610 GCGCCACGATCAGCCGAGAGATCCAAGA-TCGACTTCTGCTTAATTTCCCACACTGTCTT 20668 Query 148133 GTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGTGCGC 148192 |||| ||||| || || || ||| | | ||||| ||||| | || Sbjct 20669 GTACTTTTCCTTGACATCATTCGGGATGGTCTTAACCTTTTGCACGGAGCCACCGTCGTT 20728 Query 148193 AAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGATCAG 148252 | ||| || ||||| | |||| ||| | | | || || |||| || | ||||| Sbjct 20729 CAGAATTTGGTTGCGGACTTCGGGCGTCCAGATGCCCAGGTCAATCAATTCCTTCATCAG 20788 Query 148253 ATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGT 148312 |||| || || | | ||||||||| || |||||||| || |||| || ||| Sbjct 20789 GTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGGTTGTACATATTCGACGT 20848 Query 148313 AAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTA 148372 |||| |||| ||||||||||||||||| |||||| || |||| ||||| ||||| Sbjct 20849 GTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCGGCATTGG 20908 Query 148373 CGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCA 148432 ||| || ||||| |||||||| | || || | | || ||||| ||| ||| Sbjct 20909 CGCCACGAGCAGAGAGTTGCGAATGCCATACTTGATCACGTTCTCCTTCAACTCCGTCCA 20968 Query 148433 GTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCT 148489 |||||| || | |||||| || ||| |||||||||| |||| | || || ||| Sbjct 20969 GTCCCAAAGACCTGACGACGGCGTGACGCCCCACATGTCGAACTGGAAGATCCCCTTGCT 21028 Query 148490 AGCGGGGCTGCCCTCGTACGAGCTGTACGGTCC 148522 || || ||||| | ||| |||||| || Sbjct 21029 CGCTGGAGAGCCCTGGAACGTCTCGTACGGACC 21061 >seq151 Length=51439 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| |||| || |||| ||| || ||||||||||| Sbjct 38304 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTGCCG 38363 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||||||||||||| || |||||||| |||||||| |||||| ||||| Sbjct 38364 GCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 38423 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| || ||| | ||||||||||| | |||| || || || |||| || Sbjct 38424 ACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACGTC 38483 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 38484 TTCACGAAAATCTGCAT 38500 Score = 131 bits (144), Expect = 2e-25 Identities = 150/200 (75%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || | || ||| ||| ||| || |||||||||| Sbjct 38076 GTCGACTCCTTCTGGATGTTGTAGTCACTCAGCGT--ACGGCCGTCTTCCAGCTGCTTGC 38133 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||||||||||||| || |||||||| |||||||| |||||| |||| Sbjct 38134 CGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCT 38193 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| || ||| | ||||||||||| | || | || || || |||| | Sbjct 38194 TCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTAATCGTCTTCCCTGTCAACG 38253 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||||||||||||| Sbjct 38254 TCTTCACGAAAATCTGCATG 38273 >seq732 Length=22061 Score = 132 bits (146), Expect = 5e-26 Identities = 499/768 (65%), Gaps = 21/768 (3%) Strand=Plus/Plus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| || || ||||| |||||||| || ||||||| | ||| || ||| ||| Sbjct 8677 GTACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCAT 8736 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACT-GTACGAGCAGTC 120472 | || || ||||| | || | || |||| | ||| | | |||| | ||| | Sbjct 8737 CCAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAGTACAA-CAGGC 8795 Query 120473 GGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCA 120532 |||||||||||||||||||||||| ||||||| | || ||||||||| | || | | | Sbjct 8796 GGTCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAA 8855 Query 120533 CCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGA 120592 | |||| || | | |||||| | ||| || ||| || || | || | | Sbjct 8856 CGGGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGAATGATCGTGT 8915 Query 120593 GCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTAC---AGGCACGCAA 120649 | | || |||||| || ||||| | || | | ||||| |||||||||| Sbjct 8916 GGACGCGGTCCTCGGGCAGCT--TGTTC-ACTAGCTT---GGAGTACATGAGGCACGCAA 8969 Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709 |||||||||||| |||||| || || || |||||||| || | ||||| |||| Sbjct 8970 AGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 9029 Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769 ||| || | |||| | | || || | | || |||||| ||||| | ||| | Sbjct 9030 TGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTT 9089 Query 120770 CCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG-CTGTCGATCCAC 120828 | || |||||| || | || ||||| || ||| | |||| |||| |||| Sbjct 9090 CGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGAAG-ATACTTGTGGGTCGCACCAC 9148 Query 120829 TTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGC 120888 || | ||||| | ||| || || || || ||||| || ||| | |||| ||| || Sbjct 9149 TTGAGCGCCCAATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGG 9208 Query 120889 ATGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTG 120948 || ||| | |||| ||| | | |||||||| || | ||||| | Sbjct 9209 TGATCCTTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAG 9268 Query 120949 TGCACGCACTCGATCAGCACTTGCTGGTTG---TAAAAGTACTGCGCCTCCAGCTCGGGC 121005 || | | || ||| || | |||| | |||||| || | || ||| || | || Sbjct 9269 TGGATGTTTTCAATC-GCGAT--CTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGC 9325 Query 121006 ACCGC-CCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAA 121064 || | ||| | || | | || || ||||| || | || ||| || || Sbjct 9326 ACTTCATTGCT-AAAGTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAA 9384 Query 121065 GAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTT 121112 ||| || ||||| |||||||||||||| ||||| | ||||||||| || Sbjct 9385 GAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTT 9432 >seq1324 Length=13147 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || || |||||||| || | || || ||||||||||| ||||| ||||||||||| Sbjct 2138 GTCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTT 2197 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||||| ||||| | | |||| |||||| ||||||||||| | |||| Sbjct 2198 ATCCTGAATCTTCTGCTTCACATTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGAT 2257 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| |||| || || || || ||||||||| Sbjct 2258 CGTCTTGCCTGTCAACGTCTTCACAAAGATCTGCATG 2294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483347767202640