Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq75 185 2e-41 seq3759 149 1e-30 >seq75 Length=61118 Score = 185 bits (204), Expect = 2e-41 Identities = 575/872 (66%), Gaps = 21/872 (2%) Strand=Plus/Minus Query 110300 TGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGAT 110359 |||||||||||| || ||||| || ||||| | |||||| |||| ||||| || | | Sbjct 22280 TGACTATTTTGGGTTTAAAACCCTCGAACGAGGTTATTTGTTTCGGGTCAACGGTAAAGT 22221 Query 110360 CATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATAT 110419 | | ||||| || ||||| ||| || | || || |||||||| || ||| ||| || || Sbjct 22220 CGTCGAACGGCCGCAACAGATGATTTTACGAGTCGCGATTGGCATCCATAAACAGGACAT 22161 Query 110420 TAAAGCTGTTATTGAATGTTATGATGTATTAA-GT--AAAAAGAAAGCTATTCATGCTAC 110476 || |||| | ||| ||||| ||||| || | ||| || ||||| || Sbjct 22160 TATCGCTGCGTTGGAAACATATGA---ATTAATGTCGCAGAAGTTTTTTACCCATGCGAC 22104 Query 110477 TCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGG 110536 || || || ||||| || || || | | |||||| |||| |||||| | | | Sbjct 22103 CCCGACGCTGTTTAATGCCGGTACCCCTCGCCCCCAATTGTCTTCGTGCTTTTTATTGGC 22044 Query 110537 AATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTC 110596 || || |||||||| |||||||| || |||||| | | ||| || ||| ||||| Sbjct 22043 TATGAAAGATGATTCCATTGAAGGAATCTATGATACCTTGAAACAATGTGCGTGCATTTC 21984 Query 110597 TAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTC-GCTCAAAAGGAGCAAATA 110655 ||| | ||||| ||||| ||| | || |||| | | || | ||| | Sbjct 21983 GAAATGGGCAGGAGGGATTGGCATTAGTATGCACAATATCCGGGCCACGAATAGCTACAT 21924 Query 110656 TCGCAACAGCGAAGGGTGCTTC-AACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGAC 110714 ||| || | || || |||| ||| ||| || | || ||| | | || || || ||| Sbjct 21923 TCGAGGCA-CTAATGGCTCTTCGAACGGGA-TTATCCCCATGCTTCGCGTGTTTAATGAC 21866 Query 110715 ACTGCAAAATATGTGAATCAAGGT---GGTAAGAGAAATGGCTCATTTGCTATCTATCTC 110771 || ||| ||| ||| |||||||| || || | || || || ||||| ||||| | Sbjct 21865 ACGGCACGATACGTGGATCAAGGTGGCGGCAAACGCAAAGGATCGTTTGCGATCTACTTG 21806 Query 110772 GAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAA 110831 ||||| ||||| |||| | ||||| || | || | || |||||||| || |||| Sbjct 21805 GAACCGTGGCACGCAGACGTGTTTGAGTTTCTCGATTTGCGGAAAAATCATGGCAATGAA 21746 Query 110832 GAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGT 110891 || | || || || || || | ||| ||||| | | ||| ||||||||||||| Sbjct 21745 CTCCATCGGGCGCGGGACTTGTTCTTTGCGTTGTGGGTACCCGATCTATTCATGAAACGG 21686 Query 110892 GTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGAT 110951 || ||| |||||| | |||| | | | ||||| || |||| || || | || Sbjct 21685 GTGGAAGCAAATGGTAAGTGGAGTTTGTTCTGTCCAAATGAAGCTCCAGGGCTGTACGA- 21627 Query 110952 GTA-TATGGAAAAGAGTTTGAAGACCTT-TACGAAAAATATGAAAAAGAAGG-CAAGTTT 111008 ||| | || | ||||||| |||| || || ||||| || ||| |||| || | | Sbjct 21626 GTACTGGGGCGACGAGTTTG-AGACTTTGTATGAAAAGTACGAACAAGAGGGACGGGCGA 21568 Query 111009 CGCAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAAC 111067 | | || | || | || || | || ||||| ||| | || | || ||||||| Sbjct 21567 GGAAGACGA--TCAATGCCCAGCAGCTGTGGTTTGCGATCTTGGATGCGCAGATTGAAAC 21510 Query 111068 TGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTT 111127 ||| || | ||| | ||||| ||| | || |||||||| || || ||| | Sbjct 21509 GGGAGTGCCCTTTATGCTCTATAAGGATGCAGTGAACCGCAAATCGAACCAGCAGAACCT 21450 Query 111128 AGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 || || || ||| ||||| |||||||||| Sbjct 21449 TGGCACGATCCGGTCCAGTAACTTGTGCTGTG 21418 >seq3759 Length=3256 Score = 149 bits (164), Expect = 1e-30 Identities = 289/421 (69%), Gaps = 8/421 (2%) Strand=Plus/Plus Query 110469 CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGA-CAATTGGCTTCTTGCTT 110527 ||||| || |||| | |||||| | || |||| | || || || |||| || || Sbjct 1048 CATGCCTCTGCTACATTGTTTAACTCTGGTACTAC-GCAGCCTCAGATGTCTTCCTGTTT 1106 Query 110528 TCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGC 110587 ||| | | || || || || | | || || |||||||| || | ||||| ||||| Sbjct 1107 TCTAGTGGCTATGAAGGACGACAGTCTGGATGGGATTTATGACACTTTGAAAGAGACTGC 1166 Query 110588 TCTTATTTCTAAAAACTCTGGAG--GAATTGG-TATTCACGTTCATGATATTCGCTCAAA 110644 ||||||||| || ||||| | ||| | |||| ||||||||||||| || Sbjct 1167 TCTTATTTCCAAG---TCTGGTTCTGGGTTGTCTGTTCATATTCATGATATTCGTGCACG 1223 Query 110645 AGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGT 110704 || | ||||| | | || |||| || |||| | || || ||| | | || Sbjct 1224 CGGTTCGTATATCAAAGGAAACAACGGTGTCTCTTCTGGTATCGTGCCTATGCTTCGTGT 1283 Query 110705 CTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAATGGCTCATTTGCTAT 110764 |||||||| ||||| | |||||| |||| | || || ||||| || ||||||||| Sbjct 1284 GTTCAACGAAACTGCGAGATATGTAGATCAGGCAGGAAAAAGAAAGGGAGTATTTGCTAT 1343 Query 110765 CTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGG 110824 ||||| || ||||||||| ||||||| ||||| || | || |||||||||||||| || Sbjct 1344 ATATCTGGAGCCTTGGCATGCAGATATCTTTGAGTTTCTGGATCTTCGTAAAAATCATGG 1403 Query 110825 ATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCAT 110884 | |||||| |||| | ||||| ||||| | | | ||| | ||||| |||| || Sbjct 1404 AAAAGAAGAAATGCGAGCGAGAGATTTGTTTTACGGACTTTGGGTGCCAGATCTATTTAT 1463 Query 110885 G 110885 | Sbjct 1464 G 1464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186629019812646