Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq75 185 2e-41
seq3759 149 1e-30
>seq75
Length=61118
Score = 185 bits (204), Expect = 2e-41
Identities = 575/872 (66%), Gaps = 21/872 (2%)
Strand=Plus/Minus
Query 110300 TGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGAT 110359
|||||||||||| || ||||| || ||||| | |||||| |||| ||||| || | |
Sbjct 22280 TGACTATTTTGGGTTTAAAACCCTCGAACGAGGTTATTTGTTTCGGGTCAACGGTAAAGT 22221
Query 110360 CATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATAT 110419
| | ||||| || ||||| ||| || | || || |||||||| || ||| ||| || ||
Sbjct 22220 CGTCGAACGGCCGCAACAGATGATTTTACGAGTCGCGATTGGCATCCATAAACAGGACAT 22161
Query 110420 TAAAGCTGTTATTGAATGTTATGATGTATTAA-GT--AAAAAGAAAGCTATTCATGCTAC 110476
|| |||| | ||| ||||| ||||| || | ||| || ||||| ||
Sbjct 22160 TATCGCTGCGTTGGAAACATATGA---ATTAATGTCGCAGAAGTTTTTTACCCATGCGAC 22104
Query 110477 TCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGG 110536
|| || || ||||| || || || | | |||||| |||| |||||| | | |
Sbjct 22103 CCCGACGCTGTTTAATGCCGGTACCCCTCGCCCCCAATTGTCTTCGTGCTTTTTATTGGC 22044
Query 110537 AATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTC 110596
|| || |||||||| |||||||| || |||||| | | ||| || ||| |||||
Sbjct 22043 TATGAAAGATGATTCCATTGAAGGAATCTATGATACCTTGAAACAATGTGCGTGCATTTC 21984
Query 110597 TAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTC-GCTCAAAAGGAGCAAATA 110655
||| | ||||| ||||| ||| | || |||| | | || | ||| |
Sbjct 21983 GAAATGGGCAGGAGGGATTGGCATTAGTATGCACAATATCCGGGCCACGAATAGCTACAT 21924
Query 110656 TCGCAACAGCGAAGGGTGCTTC-AACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGAC 110714
||| || | || || |||| ||| ||| || | || ||| | | || || || |||
Sbjct 21923 TCGAGGCA-CTAATGGCTCTTCGAACGGGA-TTATCCCCATGCTTCGCGTGTTTAATGAC 21866
Query 110715 ACTGCAAAATATGTGAATCAAGGT---GGTAAGAGAAATGGCTCATTTGCTATCTATCTC 110771
|| ||| ||| ||| |||||||| || || | || || || ||||| ||||| |
Sbjct 21865 ACGGCACGATACGTGGATCAAGGTGGCGGCAAACGCAAAGGATCGTTTGCGATCTACTTG 21806
Query 110772 GAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAA 110831
||||| ||||| |||| | ||||| || | || | || |||||||| || ||||
Sbjct 21805 GAACCGTGGCACGCAGACGTGTTTGAGTTTCTCGATTTGCGGAAAAATCATGGCAATGAA 21746
Query 110832 GAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGT 110891
|| | || || || || || | ||| ||||| | | ||| |||||||||||||
Sbjct 21745 CTCCATCGGGCGCGGGACTTGTTCTTTGCGTTGTGGGTACCCGATCTATTCATGAAACGG 21686
Query 110892 GTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGAT 110951
|| ||| |||||| | |||| | | | ||||| || |||| || || | ||
Sbjct 21685 GTGGAAGCAAATGGTAAGTGGAGTTTGTTCTGTCCAAATGAAGCTCCAGGGCTGTACGA- 21627
Query 110952 GTA-TATGGAAAAGAGTTTGAAGACCTT-TACGAAAAATATGAAAAAGAAGG-CAAGTTT 111008
||| | || | ||||||| |||| || || ||||| || ||| |||| || | |
Sbjct 21626 GTACTGGGGCGACGAGTTTG-AGACTTTGTATGAAAAGTACGAACAAGAGGGACGGGCGA 21568
Query 111009 CGCAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAAC 111067
| | || | || | || || | || ||||| ||| | || | || |||||||
Sbjct 21567 GGAAGACGA--TCAATGCCCAGCAGCTGTGGTTTGCGATCTTGGATGCGCAGATTGAAAC 21510
Query 111068 TGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTT 111127
||| || | ||| | ||||| ||| | || |||||||| || || ||| |
Sbjct 21509 GGGAGTGCCCTTTATGCTCTATAAGGATGCAGTGAACCGCAAATCGAACCAGCAGAACCT 21450
Query 111128 AGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159
|| || || ||| ||||| ||||||||||
Sbjct 21449 TGGCACGATCCGGTCCAGTAACTTGTGCTGTG 21418
>seq3759
Length=3256
Score = 149 bits (164), Expect = 1e-30
Identities = 289/421 (69%), Gaps = 8/421 (2%)
Strand=Plus/Plus
Query 110469 CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGA-CAATTGGCTTCTTGCTT 110527
||||| || |||| | |||||| | || |||| | || || || |||| || ||
Sbjct 1048 CATGCCTCTGCTACATTGTTTAACTCTGGTACTAC-GCAGCCTCAGATGTCTTCCTGTTT 1106
Query 110528 TCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGC 110587
||| | | || || || || | | || || |||||||| || | ||||| |||||
Sbjct 1107 TCTAGTGGCTATGAAGGACGACAGTCTGGATGGGATTTATGACACTTTGAAAGAGACTGC 1166
Query 110588 TCTTATTTCTAAAAACTCTGGAG--GAATTGG-TATTCACGTTCATGATATTCGCTCAAA 110644
||||||||| || ||||| | ||| | |||| ||||||||||||| ||
Sbjct 1167 TCTTATTTCCAAG---TCTGGTTCTGGGTTGTCTGTTCATATTCATGATATTCGTGCACG 1223
Query 110645 AGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGT 110704
|| | ||||| | | || |||| || |||| | || || ||| | | ||
Sbjct 1224 CGGTTCGTATATCAAAGGAAACAACGGTGTCTCTTCTGGTATCGTGCCTATGCTTCGTGT 1283
Query 110705 CTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAATGGCTCATTTGCTAT 110764
|||||||| ||||| | |||||| |||| | || || ||||| || |||||||||
Sbjct 1284 GTTCAACGAAACTGCGAGATATGTAGATCAGGCAGGAAAAAGAAAGGGAGTATTTGCTAT 1343
Query 110765 CTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGG 110824
||||| || ||||||||| ||||||| ||||| || | || |||||||||||||| ||
Sbjct 1344 ATATCTGGAGCCTTGGCATGCAGATATCTTTGAGTTTCTGGATCTTCGTAAAAATCATGG 1403
Query 110825 ATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCAT 110884
| |||||| |||| | ||||| ||||| | | | ||| | ||||| |||| ||
Sbjct 1404 AAAAGAAGAAATGCGAGCGAGAGATTTGTTTTACGGACTTTGGGTGCCAGATCTATTTAT 1463
Query 110885 G 110885
|
Sbjct 1464 G 1464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186629019812646
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |