Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_025440.1
Length=134369
Score E
Sequences producing significant alignments: (Bits) Value
seq6608 86.0 5e-12
seq4439 82.4 7e-11
>seq6608
Length=1660
Score = 86.0 bits (94), Expect = 5e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 76501 GTTGTACTGTTTGGCATCGCTCTTCATATCTACCTCATCAGGCAACCAGTAATTTGTAGT 76560
||||||||| ||||||| |||||| || ||||| || || | |||| | || || |
Sbjct 1593 GTTGTACTGGCGCGCATCGCCCTTCATGTCCACCTCGTCGGGGATCCAGAAGTTGGTCGA 1534
Query 76561 TAACTCTTTGTAAGCTCGATAGAAAGATGGATACCGAATATCGTTCCAGTTTACGATACC 76620
| ||| ||||| || |||||||| || || ||| |||| ||||||||||| | ||| ||
Sbjct 1533 CAGCTCCTTGTACGCCCGATAGAAGGACGGGTACGGAATGTCGTTCCAGTTGAGGATGCC 1474
>seq4439
Length=2591
Score = 82.4 bits (90), Expect = 7e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 75671 TCATCGAACCCATTGTCTAAGTTTGTTTTCTTGTAACTAGAGTTACGCATTTCGAAAAAG 75730
|| ||||||||||| || | || || |||||||| | || ||||| ||||| |||
Sbjct 1940 TCGTCGAACCCATTATCCGAATTGGTCTTCTTGTACGACGCATTGCGCATCTCGAAGAAG 1999
Query 75731 TCGGTTTTTGTTTCTGTAAAGTTATCGGCGTAAGCTTTAATCCATGTCAT 75780
||||| || ||||| || ||||| |||||||| || || ||||| | |||
Sbjct 2000 TCGGTCTTGGTTTCGGTGAAGTTGTCGGCGTAGGCCTTGATCCACGGCAT 2049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429792683017180
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |