Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq5020 100 6e-16 seq4687 93.3 9e-14 >seq5020 Length=2230 Score = 100 bits (110), Expect = 6e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 73496 AGTGGCAGAGTGGTTTAATGCAACGGTCTTGAAAACCGTCGAGGGTGAAAGTCCTCCGTG 73555 |||||||||| |||||||||| || ||||||||||| ||||||||| | | |||||||| Sbjct 1297 AGTGGCAGAGCGGTTTAATGCTACAGTCTTGAAAACTGTCGAGGGTTCACGCCCTCCGTG 1238 Query 73556 AGTTCAAATCTCACCTTCACCGCCA 73580 ||||| |||||||||| |||||| Sbjct 1237 AGTTCGAATCTCACCTCTTCCGCCA 1213 >seq4687 Length=2411 Score = 93.3 bits (102), Expect = 9e-14 Identities = 197/290 (68%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 299026 CACTAAATGTTGGTGCATTGACTGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCA 299085 ||||| || | || ||| | | |||||| | || ||||| ||||||||||||||||| | Sbjct 1735 CACTAGATATGGGAGCACTTATTGCTGGAGCAAAATATCGAGGTGAATTTGAAGAACG-A 1677 Query 299086 TCGACA-ATTTGCTAAAAGAACTAAAGAAACGTG-----AAAATACTATTGTTTTCATTG 299139 | || | | || | ||||| | | ||| || ||| || | |||||| || | Sbjct 1676 TTGAAAGCTGTGTTGAAAGAGGTGGAAAAAGCTGAAGGTAAAGTAATTTTGTTT--ATAG 1619 Query 299140 ATGAAATTCATATTATGGTTGGGGCTGGTTCCGCAAGTAATGGTTCTATGGACATGAGCA 299199 | || | || | ||| || || ||||| || ||| | ||||||| || ||| Sbjct 1618 ACGAGCTCCACACTATCGTAGGAGCTGG---GGCCAGTGAAGGTTCTACAGATGCAGGCA 1562 Query 299200 ATATGCTTAAGCCAGCACTTTCACGTGGTGAGATTCGTGTAATTGGTGCAACAACATATG 299259 || |||| |||||||| | | || ||| | || |||||||| || || || ||| | Sbjct 1561 ATCTGCTCAAGCCAGCTTTAGCTCGCGGTCAAATACGTGTAATAGGAGCTACTACACTTA 1502 Query 299260 ATGAATATCGTAAAAATATCGAGAAAGATAGTGCATTAACTCGTCGTTTT 299309 | ||||||||| || | || || ||||| |||||| ||||| ||| Sbjct 1501 AAGAATATCGTCAATACATAGAAAAAGACGCAGCATTAGAACGTCGCTTT 1452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1114998513648734