Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq151 100 3e-16 seq1324 95.1 1e-14 seq732 95.1 1e-14 seq7203 89.7 5e-13 >seq151 Length=51439 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| |||| ||||| ||||| ||||| || |||| | Sbjct 38079 GACTCCTTCTGGATGTTGTAGTCACTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCA 38138 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || || || || |||| Sbjct 38139 AAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACA 38198 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || |||| || || Sbjct 38199 TTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTAATCGTCTTCCCTGTCAACGTCTTC 38258 Query 132110 ATGAAAATCTGCATG 132124 | ||||||||||||| Sbjct 38259 ACGAAAATCTGCATG 38273 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| || || ||||| ||||| || |||| | Sbjct 38307 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTGCCGGCA 38366 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || || || || |||| Sbjct 38367 AAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACA 38426 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || |||| || || Sbjct 38427 TTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTC 38486 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 38487 ACGAAAATCTGCAT 38500 >seq1324 Length=13147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131936 TTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATT 131995 ||||| ||||||||||| | || || ||||| || || || |||| | |||| Sbjct 2106 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2165 Query 131996 AGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCC 132055 |||||||| || || ||||| |||||||| ||||| ||| || || |||| | || Sbjct 2166 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTGTCA 2225 Query 132056 ACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAA 132115 | | |||| ||||||||| || | ||| | ||| || || |||| || || | || Sbjct 2226 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAAAG 2285 Query 132116 ATCTGCATGA 132125 |||||||||| Sbjct 2286 ATCTGCATGA 2295 >seq732 Length=22061 Score = 95.1 bits (104), Expect = 1e-14 Identities = 294/451 (65%), Gaps = 13/451 (3%) Strand=Plus/Minus Query 46824 GCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCA-GTTTTGC 46882 || ||||| || ||||||| || ||||||||| | || || |||||| ||| ||| Sbjct 9120 GCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGC 9061 Query 46883 CGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTT 46942 | || |||| | || | || | ||||| ||||| | ||| |||||| | Sbjct 9060 T-CGATCTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCT 9002 Query 46943 GATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGT 47002 || || || || || | ||||||||||||||||| ||| ||| | || || Sbjct 9001 CATTAGTCGAGATGAGGGCATGCACACGGACTTTGCGTGCCTCATGTACTCCAAGCTAGT 8942 Query 47003 GAATGAGAAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGA 47062 ||| || | | |||| ||| | || || | || || |||| ||||| Sbjct 8941 GAACAAGC---TGCCCGAGGACCGCGTCCACACGATCATTCGCGACGCAGTGACGATCGA 8885 Query 47063 AAAGGAGTTTTTTACTGCGG----CGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGT 47118 | |||||| | |||| |||||||||| | || | ||||||||| | | Sbjct 8884 GCACGAGTTTGT----GCGGGACTCGCTGCCCGTTGAGCTGATTGGCATGAACTCGGCGC 8829 Query 47119 CTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGA 47178 |||||| | || ||||||||||| ||||| || |||||| |||||| ||| Sbjct 8828 TCATGTGCCAGTACATTGAGTTTGTAGCGGACCGCCTGTTGTACTCGCTCGGCGTGTCGA 8769 Query 47179 AATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAA 47238 | ||| |||| || || ||||| | ||| ||| || ||||| ||||||| | Sbjct 8768 AGATTTTCCATGCAAAGAACCCATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGA 8709 Query 47239 CCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 | || ||||||||||| || || || ||||| Sbjct 8708 CGAACTTTTTCGAGAAGCGTGTGGGCGAGTA 8678 >seq7203 Length=1522 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 47058 ATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAG 47117 |||||||| || || | |||| ||||| || || | ||| | |||||||| || | Sbjct 891 ATCGAAAAAGAATTCGTAACTGATGCGCTACCTGTTTCGTTGATTGGCATGAATGCCGAA 832 Query 47118 TCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCG 47177 |||||| |||| |||||||||||||| |||| || |||| | ||| Sbjct 831 CTAATGTGCCAATACATTGAGTTTGTGGCCGATCACCTTTTGGAATCATTAGGAGTTAAT 772 Query 47178 AAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAA 47237 ||| || |||||| ||||| || || || ||| | | |||||| | | |||||| Sbjct 771 AAAATTTATAATGCGACCAATCCTTTCGATTTCATGGATATGATTTCGTTACAAGGCAAA 712 Query 47238 ACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 |||||||| ||||| ||||| || || || || Sbjct 711 ACCAATTTCTTCGAAAAACGTGTAGGTGAATA 680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476539195962960