Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq413 205 1e-47 >seq413 Length=60602 Score = 205 bits (226), Expect = 1e-47 Identities = 451/660 (68%), Gaps = 17/660 (3%) Strand=Plus/Plus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || || ||||||||||| || || || |||||||| || | | || | ||| || || Sbjct 13921 AGCGGTTCCACGTGGTTCAGATACACATGCGCGTCACCAATGACATGAATAAACTCGCCG 13980 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTG 147039 || || | || | ||| || ||||| | | || ||||||| ||||||||| || ||| Sbjct 13981 GGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCGTAGCTGGCGATATTG 14040 Query 147040 AAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099 || ||||| || || |||||||| | || | |||||||| ||||||||| | ||| ||| Sbjct 14041 AATGGGACGCCGAGCCCCATGTCAGCTGAGCGCTGGTACATCTGGCACGACAACTCACCG 14100 Query 147100 TCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCC 147159 || || ||||||||||| || | |||||||||||||||||||||||| | || || Sbjct 14101 TCAGCTACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCCATGTCATTAAGATCA 14160 Query 147160 GCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTC-TCGGGGTTCCTCTTAATCTCTTC 147218 || || ||||||||||| | ||| | || | | || ||||| || | | | Sbjct 14161 GCCGGATTCCAGGCCGACAGCACGATACGGC-GATCAGAAGGGTTTGTCCGGAGTTTGTG 14219 Query 147219 GATAACC-CACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACG 147276 || ||| || | |||||||||||||| ||||| ||| | | | ||| ||| | Sbjct 14220 TATCACCTCAGC-GAGCTGGTCCACGCCTTGGCCTGTATAG-TCGGCATGCATGTCGGTG 14277 Query 147277 TACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTT 147336 ||| | || || || || | ||||||||| || || ||||| || ||||| || | | Sbjct 14278 TACTTTGCACCGAAATGACGCCACTGGAAACCATATACTGGTCCAAGGTCTCC-TACCTC 14336 Query 147337 CTGTG-CGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCC 147395 | ||| | ||||| | | || |||| | || || | |||||||||| | Sbjct 14337 CCGTGACTGTAAGCCTCTACTGTCCAGGTACTCACGCGATCCATTACCGTCCCAGATACG 14396 Query 147396 CACTCC-CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCT 147454 || || || || | ||| | | |||| ||| |||||||| ||||||| Sbjct 14397 GACACCTTTTTGCTG-TAGCGTGTGTGCACTCGTGTCACCCTTAATGAACCACAGCAGCT 14455 Query 147455 CCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGTCCC 147511 |||| || || | ||| || || | ||| || ||||||| || ||| | || || Sbjct 14456 CCTCAGCCACACCTCGCCAGAACACGCGCTTCGTCGTCAGCAACGGAAACGCGTTGTTCC 14515 Query 147512 TCAGCGAATACCTCGC--CTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTC 147569 ||| | || |||| ||| | |||||||| |||| ||| |||||||| || | ||| Sbjct 14516 TCA--AACTAAATCGCATCTGCGCTCCAAACACTGACAACGTCCCCGTGCCGGTTCGGTC 14573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583399849550400