Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq732 268 1e-65 seq119 176 6e-38 seq75 131 2e-24 seq317 122 1e-21 seq66 114 2e-19 seq4369 104 3e-16 >seq732 Length=22061 Score = 268 bits (296), Expect = 1e-65 Identities = 417/585 (71%), Gaps = 22/585 (4%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| ||||||||||| || || || |||| | || | ||| | |||||| || Sbjct 9558 AACCCCAACCGCTTTGTGCTCTTTCCGATCCAAGAGCACGACGTGTGGCAGATGTAC-AA 9500 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGC-CGA---CACGG 1455849 ||||| || || || || ||||| || |||||| | ||| | || || ||| || || Sbjct 9499 GAAGGCGGAAGCTTCGTTCTGGACTGCTGAGGAGCTAGACTT-GGTGCACGATCTCAAGG 9441 Query 1455850 TCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTT 1455909 |||||| | || | ||| | ||||| || || |||||||| || |||||||| | Sbjct 9440 ---ACTGGGCGAACCTCACGGACAATGAGCGTCACTTTATCAAGCATGTGCTCGCCTTCT 9384 Query 1455910 TTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTC 1455969 || || ||||| |||||||| ||| |||||| |||||| ||||| || || || Sbjct 9383 TT-GCAGCCAGTGATGGCATTGTGAACGAGAATCTGGCCATGAACTTTAGCAATGAAGTG 9325 Query 1455970 CAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCT 1456029 ||| |||| || || || | ||||| || ||||||||||| || |||||||||||||| Sbjct 9324 CAAGTGCCGGAAGCTCGGTGCTTTTATGGCTTCCAGATCGCGATTGAAAACATCCACTCG 9265 Query 1456030 GAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTC 1456089 ||| ||| ||||| || || ||||| ||| | || || || |||||||| ||||| Sbjct 9264 GAAGTCTATTCGCTGCTCATTGACACGTACATTAAAGAGGCGACGGAGAAGGATCACCTT 9205 Query 1456090 TTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTG- 1456148 | ||||| || || || | |||| || | || || ||| | |||||| | ||||| Sbjct 9204 CTGCGCGCGATTGAGACCATCCCGTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAGTGG 9145 Query 1456149 ---GATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTC 1456204 || | ||||| | | ||| | || |||||||| | | |||||| | ||| Sbjct 9144 TGCGACCCACAAGTA--TCTTCG----TACGCGGAGCGGCTGCTGGCATTTGCCTCGGTC 9091 Query 1456205 GAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTC 1456264 || ||||| || ||||||||| |||||| | ||||||||||| ||||||||||| ||| Sbjct 9090 GAAGGCATTTTCTTCTCGGGCTCGTTCTGCTCGATCTTTTGGCTGAAGAAGCGCGGTCTC 9031 Query 1456265 ATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||| || | || |||| ||||| | || ||||| || || Sbjct 9030 ATGCCTGG-CCTCAGCTTCTCGAACGAGCTCATTAGTCGAGATGA 8987 Score = 152 bits (168), Expect = 7e-31 Identities = 234/326 (72%), Gaps = 12/326 (4%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTC----GACC 1456507 ||||| |||||||| || || | ||| | | ||| || ||||||| | | |||| Sbjct 8981 TGCACACGGACTTTGCGTGCCTCATGTACTCCAAGCTAGTGAACAAGCTGCCCGAGGACC 8922 Query 1456508 GACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAG 1456567 | ||| | || | ||||| ||| || || ||||||| | |||||||| | || Sbjct 8921 G-CGTCCACACG---ATCATTCGCGACGCAGTGACGATCGAGCACGAGTTTGTGCGGGAC 8866 Query 1456568 TCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATT 1456627 |||||||| || | ||| || ||||||||| | | ||||||||||||||||||||| || Sbjct 8865 TCGCTGCCCGTTGAGCTGATTGGCATGAACTCGGC-GCTCATGTGCCAGTACATTGAGTT 8807 Query 1456628 TTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAAC 1456687 | || || ||||||||| | |||||||| | | |||| | || | ||| Sbjct 8806 T-GTAGCGGACCGCCTGTTGTACTCGCTCGGC-GTGTCGAAGATTTTCCATGCAAAGAAC 8749 Query 1456688 CCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGC 1456747 || || |||||||| |||||||||| |||||||||| |||||||||||| || Sbjct 8748 CCATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGACGAACTTTTTCGAGAAGCGT 8689 Query 1456748 GT-GGCGAGTACGCCAAGGCCGGCGT 1456772 || ||||||||| ||||||| || || Sbjct 8688 GTGGGCGAGTACTCCAAGGCTGGTGT 8663 >seq119 Length=53999 Score = 176 bits (194), Expect = 6e-38 Identities = 329/481 (68%), Gaps = 7/481 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAG 332932 |||||||| |||||||| || ||||| | || ||| ||||| | | ||| ||||||| Sbjct 47838 AAGCGCAGCATGGCACAGCGACTCTGAATGGGCTCAATGACTTTCGTCGAGTTGTTGCAC 47897 Query 332933 GCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGG 332992 || || || || ||||| ||| | ||||| ||| || || ||||| || Sbjct 47898 GCGAGAGCGAAGCGCGTGGTAGCAGAGAAGAGCTCCATCGTCCGTCGAAGTGCCTGCTGA 47957 Query 332993 GCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGC 333052 || || | ||| | | ||| ||||||||||| || | || |||||||||||| |||| Sbjct 47958 GCTGCAGCCGTCATGGCGTCCGCCTCGTCGAGAATCACGAGCTTGTGGCGCCCTGGCGGG 48017 Query 333053 AGATCAACCCTTTTCGAGGCGTGGTGTT--TGATGATCTTGCGCACGACGTCCACGCCGC 333110 || | | |||| | ||| | | |||| || | || || ||| | || | Sbjct 48018 AG--CGTCACTTTCTGCTGCGCGAACATCTTGATCTTCGTCCGGACCGTGTCGATCCCAC 48075 Query 333111 GCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCG---GCCGCACCCAAGAGGA 333167 |||||||||||||||| || || |||||||||| | | | | || || ||||| Sbjct 48076 GCTCGTCCGACGCGTTCAGCTCCAGCACGGCCTGTTTGACATACGTCGGGCCTAAGAGCT 48135 Query 333168 CGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGA 333227 || |||| || ||| ||| ||||||||||||||||| || ||||| || || || | | Sbjct 48136 CGTGCGCGAGACACAAGATACTCGTGGTCTTGCCCGTTCCCGGCGGCCCGGCGAGGATCA 48195 Query 333228 GGTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTTGC 333287 ||||| |||||||||| || |||| |||| ||| || | | || ||||| Sbjct 48196 AGTTGGTCATGTTGCCGGCGCGCGCCATGGCCTGGAGACTCGCGATCGTGTTGCGGTTGC 48255 Query 333288 CGACAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGGGAGGCCAAAGTCGG 333347 | || | |||| | | || ||| ||||||||||| | ||| || ||||||||| Sbjct 48256 CCACGACGTCGGCCAAGACGCGTGGACGGTACTTTTCCACCCACGGCGCTTCAAAGTCGG 48315 Query 333348 C 333348 | Sbjct 48316 C 48316 >seq75 Length=61118 Score = 131 bits (144), Expect = 2e-24 Identities = 201/287 (70%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 259895 ATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGC 259954 ||||||||| |||| || ||| ||||| || ||||| ||||||||||| || || ||| Sbjct 22132 ATGTCGCAGAAGTTTTTTACCCATGCGACCCCGACGCTGTTTAATGCCGGTACCCCTCGC 22073 Query 259955 CCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTAT 260014 || || || ||||||||| | |||| ||||| | ||||| || || || |||||| Sbjct 22072 CCCCAATTGTCTTCGTGCTTTTTATTGGCTATGAAAGATGATTCCATTGAAGGAATCTAT 22013 Query 260015 GACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA 260074 || || | || || || ||| ||| || || ||| || || || || || Sbjct 22012 GATACCTTGAAACAATGTGCGTGCATTTCGAAATGGGCAGGAGGGATTGGCATTAGTATG 21953 Query 260075 CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTT 260134 ||||| | || ||| || |||| | ||||| || ||| || ||||| || Sbjct 21952 CACAATATCCGGGCCACGAATAGCTACATTCGAGGCACTAATGGCTCTTCGAACGGGATT 21893 Query 260135 GTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 | |||||||||||||| ||||| |||||||| || ||||| || || Sbjct 21892 ATCCCCATGCTTCGCGTGTTTAATGACACGGCACGATACGTGGATCA 21846 Score = 102 bits (112), Expect = 1e-15 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972 || ||||| | |||||||| |||||||||||| ||||| ||||| ||||| | |||| Sbjct 20940 AGTATGGCATTCGCAACTCTCTGCTCGTGGCGCCAATGCCGACGGCTTCGACGGCCCAGA 20881 Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGC 263032 | |||||||||| |||| || | ||| |||| || || |||| |||||||||| Sbjct 20880 TTCTGGGCAACAACGAGTCGATTGAGCCGTACACGTCGAATATGTACAACCGCCGCGTGC 20821 Query 263033 TCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCC 263092 | | ||||| ||||| | || ||| ||||| | ||| || | | | ||| Sbjct 20820 TGGCTGGCGAGTTTACGATTGTAAACAAGTACCTGATGAAGGAATTGATTGACCTGGGCA 20761 Query 263093 TGTGGACGCCCGACTTTCGCGACC 263116 | ||||||||||| | ||| ||| Sbjct 20760 TCTGGACGCCCGAAGTCCGCAACC 20737 >seq317 Length=35303 Score = 122 bits (134), Expect = 1e-21 Identities = 177/247 (72%), Gaps = 10/247 (4%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| | | |||||||||||||| || |||||||| || || || Sbjct 11373 TCGTACTCGACGTACATCTACAAGGTGCTGCGTCAAGTGCACCCGGAGAC-----GGGCA 11319 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || | | | | | |||||||||||||||||||| |||| ||||| |||| |||||| Sbjct 11318 TCAGCAAGCGCGGC-ATGTCGATCATGAACTCGTTCATCAATGACATCTTCGAGCGCATC 11260 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG--CGCAACACGATCGGCACGCGCG 725073 | | | ||||| || || |||||| ||||||| | || | ||| | || | Sbjct 11259 GCCTCGGAGGCGGGCAAGCTCTCGCGCTACAACAAGAAGTCGACGCTGTCG--AGTCGTG 11202 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 |||||||||| |||||||| ||||| | | || || ||||||| ||||||||| || | Sbjct 11201 AGATCCAGACGGCCGTGCGTCTGATGCTTCCTGGGGAGCTGGCCAAGCACGCCGTGTCGG 11142 Query 725134 AGGGCAC 725140 | ||||| Sbjct 11141 AAGGCAC 11135 >seq66 Length=63280 Score = 114 bits (126), Expect = 2e-19 Identities = 177/250 (71%), Gaps = 16/250 (6%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| | | |||||||||||||| || |||||||| || || || Sbjct 40138 TCGTACTCGACGTACATCTACAAGGTGCTGCGTCAAGTGCACCCGGAGAC-----GGGCA 40084 Query 724956 TCCTCCAACAAGTCC---ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGC 725012 || | |||| | |||||||||||||||||||| |||| ||||| |||| ||| Sbjct 40083 TC----AGCAAGCGCGGTATGTCGATCATGAACTCGTTCATCAATGACATTTTCGAGCGC 40028 Query 725013 ATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCG--CAACACGATCGGCACGC 725070 || | | |||||||| || |||||| ||||||| | || | ||| | | Sbjct 40027 ATTGCTTCGGAGGCCGGCAAGCTCTCGCGCTACAACAAGAAGTCGACGCTGTCG--AGCC 39970 Query 725071 GCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCT 725130 | ||||||||||| |||||||| ||||| | | || || ||||||| ||||||||| | Sbjct 39969 GTGAGATCCAGACGGCCGTGCGTCTGATGCTTCCGGGTGAGCTGGCCAAGCACGCCGTGT 39910 Query 725131 CCGAGGGCAC 725140 | || ||||| Sbjct 39909 CGGAAGGCAC 39900 >seq4369 Length=2652 Score = 104 bits (114), Expect = 3e-16 Identities = 255/378 (67%), Gaps = 14/378 (4%) Strand=Plus/Plus Query 1455937 GAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTAC 1455996 |||||||| || | |||||||||||||| || |||| |||||||||| | || Sbjct 2232 GAGAACCTAGCTGTGAATTTTATGAAAGAGGTGCAGGTGCCGGAGGCACGTTGTCTCTAT 2291 Query 1455997 GGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACC 1456056 || || |||||| || |||||||| || |||| || ||||| ||| |||| || || Sbjct 2292 GGATTTCAGATCATGATGGAAAACATACATGCTGAGACTTACTCTCTCTTGATTGATACA 2351 Query 1456057 TACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCG 1456116 || | || || |||| || |||| | | | |||| | | || || | || | Sbjct 2352 TATATTAATGATGCGGTAGAAAAGGCCAAGTTATTTCAATCTGTAGATACTATTCCCACC 2411 Query 1456117 GTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTG 1456176 | |||| || || | ||||| |||||||||| | || ||||| ||| |||| Sbjct 2412 ATTGGGAAGAAAGCAAAATGGGCACTGAAGTGGAT--AGAA-GAGGG----TACA-TTTG 2463 Query 1456177 CCGAGCGGCTCGTCGGCTT--TGCCGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC 1456234 | ||||| ||| | | ||| || || || ||||| || || ||||| || |||||| Sbjct 2464 CTGAGCGTCTCATTGCCTTCATGGCG-GTGGAGGGGATATTCTTCTCAGGTGCTTTCTGT 2522 Query 1456235 GCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC-AACGAAT 1456293 | || | |||| | || || || || | ||||| || || |||| | || |||| Sbjct 2523 TCTATTTATTGGTTGAAAAAACGTGGTTTAATGCCAGG--TTTGACTTTCTCTAATGAAT 2580 Query 1456294 TTATCAGTCGCGACGAAG 1456311 | || ||| ||||||| Sbjct 2581 TGATTTCTCGTGACGAAG 2598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176645483085932