Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq151 145 7e-30 seq1324 138 1e-27 seq276 82.4 7e-11 >seq151 Length=51439 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| || |||||||| ||| || || || |||| || Sbjct 38291 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTC 38350 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || ||||| |||| |||||||||||| | || | || |||||||||| Sbjct 38351 CAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 38410 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||||| | | | | || ||| || ||||| |||| ||||||||| || Sbjct 38411 GATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTT 38470 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || ||||| || |||||||| Sbjct 38471 CCCTGTCAACGTCTTCACGAAAATCTGCAT 38500 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| || |||||||| || || || || |||| || Sbjct 38063 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGCGTACGGCCGTCTTC 38122 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || ||||| |||| |||||||||||| | || | || |||||||||| Sbjct 38123 CAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 38182 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||||| | | | | || ||| || ||||| |||| ||| ||||| || Sbjct 38183 GATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTAATCGTCTT 38242 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || ||||| || |||||||| Sbjct 38243 CCCTGTCAACGTCTTCACGAAAATCTGCAT 38272 >seq1324 Length=13147 Score = 138 bits (152), Expect = 1e-27 Identities = 153/201 (76%), Gaps = 5/201 (2%) Strand=Plus/Plus Query 35537 AACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTA 35596 ||||||| ||||||| |||||||| || | | || || |||| ||||| ||||| Sbjct 2097 AACGTAC---CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTG 2153 Query 35597 CCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC 35656 || ||||| |||| ||||||||||| | ||||| || ||||| ||| ||||| ||| Sbjct 2154 CCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGC 2213 Query 35657 TTCAGAGTTGCCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAA 35715 |||| | ||| || | ||||| || ||||| |||| ||||||||| || || ||||| Sbjct 2214 TTCACA-TTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAA 2272 Query 35716 AGTTTTCACAAATATCTGCAT 35736 || |||||||| |||||||| Sbjct 2273 CGTCTTCACAAAGATCTGCAT 2293 >seq276 Length=79158 Score = 82.4 bits (90), Expect = 7e-11 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 41175 GATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTCCAC-GT 41233 ||| | |||||| || |||||||| || ||||| || | | || ||||||| | || Sbjct 9901 GATTCTCTCGAGAATGAGCTGCGCTACTCGATCCCCTCGCTTGACGGCAAAGTCTTCCGT 9960 Query 41234 CGTTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGATCGATGACGCCAG 41293 || || ||| | || | | ||||||||| || ||| |||| ||||||||| |||| Sbjct 9961 CGA-GTGGTTGAACAGGAGCACGCCCACGTTACCGCGGTAATCGGCATCGATGACACCAG 10019 Query 41294 CAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGATCCTACCGTAAC 41353 | || ||||||| | ||||| ||| || ||||| || ||||| | | |||| | Sbjct 10020 CGCCAGTGTCGATGAAATTCTTCAGCGCAAGACCCGAGCGAGGCGCCACGCGGGCGTAGC 10079 Query 41354 AATCTTTGGGCAGCTGCAGAG-CAATGTCCGTCTTGATCAG 41393 | | |||| | ||| | ||| ||||||||||| ||| Sbjct 10080 AGCTGTCAGGCA-CAGCAATGGCAAGGTCCGTCTTGACCAG 10119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450725496356880