Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq151 145 7e-30
seq1324 138 1e-27
seq276 82.4 7e-11
>seq151
Length=51439
Score = 145 bits (160), Expect = 7e-30
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
||||| || | ||| |||||| || |||||||| ||| || || || |||| ||
Sbjct 38291 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTC 38350
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
||||||||| || ||||| |||| |||||||||||| | || | || ||||||||||
Sbjct 38351 CAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 38410
Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706
|||||| ||||||| | | | | || ||| || ||||| |||| ||||||||| ||
Sbjct 38411 GATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTT 38470
Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| ||||| || ||||| || ||||||||
Sbjct 38471 CCCTGTCAACGTCTTCACGAAAATCTGCAT 38500
Score = 136 bits (150), Expect = 4e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
||||| || | ||| |||||| || |||||||| || || || || |||| ||
Sbjct 38063 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGCGTACGGCCGTCTTC 38122
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
||||||||| || ||||| |||| |||||||||||| | || | || ||||||||||
Sbjct 38123 CAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 38182
Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706
|||||| ||||||| | | | | || ||| || ||||| |||| ||| ||||| ||
Sbjct 38183 GATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTAATCGTCTT 38242
Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| ||||| || ||||| || ||||||||
Sbjct 38243 CCCTGTCAACGTCTTCACGAAAATCTGCAT 38272
>seq1324
Length=13147
Score = 138 bits (152), Expect = 1e-27
Identities = 153/201 (76%), Gaps = 5/201 (2%)
Strand=Plus/Plus
Query 35537 AACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTA 35596
||||||| ||||||| |||||||| || | | || || |||| ||||| |||||
Sbjct 2097 AACGTAC---CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTG 2153
Query 35597 CCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC 35656
|| ||||| |||| ||||||||||| | ||||| || ||||| ||| ||||| |||
Sbjct 2154 CCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGC 2213
Query 35657 TTCAGAGTTGCCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAA 35715
|||| | ||| || | ||||| || ||||| |||| ||||||||| || || |||||
Sbjct 2214 TTCACA-TTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAA 2272
Query 35716 AGTTTTCACAAATATCTGCAT 35736
|| |||||||| ||||||||
Sbjct 2273 CGTCTTCACAAAGATCTGCAT 2293
>seq276
Length=79158
Score = 82.4 bits (90), Expect = 7e-11
Identities = 154/221 (70%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 41175 GATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTCCAC-GT 41233
||| | |||||| || |||||||| || ||||| || | | || ||||||| | ||
Sbjct 9901 GATTCTCTCGAGAATGAGCTGCGCTACTCGATCCCCTCGCTTGACGGCAAAGTCTTCCGT 9960
Query 41234 CGTTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGATCGATGACGCCAG 41293
|| || ||| | || | | ||||||||| || ||| |||| ||||||||| ||||
Sbjct 9961 CGA-GTGGTTGAACAGGAGCACGCCCACGTTACCGCGGTAATCGGCATCGATGACACCAG 10019
Query 41294 CAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGATCCTACCGTAAC 41353
| || ||||||| | ||||| ||| || ||||| || ||||| | | |||| |
Sbjct 10020 CGCCAGTGTCGATGAAATTCTTCAGCGCAAGACCCGAGCGAGGCGCCACGCGGGCGTAGC 10079
Query 41354 AATCTTTGGGCAGCTGCAGAG-CAATGTCCGTCTTGATCAG 41393
| | |||| | ||| | ||| ||||||||||| |||
Sbjct 10080 AGCTGTCAGGCA-CAGCAATGGCAAGGTCCGTCTTGACCAG 10119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450725496356880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |