Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq151 134 1e-26 seq1324 116 4e-21 seq7774 95.1 1e-14 >seq151 Length=51439 Score = 134 bits (148), Expect = 1e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 38283 AGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 38342 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || Sbjct 38343 CCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCC 38402 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || ||| | | ||| |||| |||||||| || || Sbjct 38403 TTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTG 38462 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || || || || |||||||| ||||| ||| Sbjct 38463 ATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATCTTG 38504 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||| | | || | Sbjct 38055 AGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGCGTACGG 38114 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || Sbjct 38115 CCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCC 38174 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || ||| | | ||| |||| |||||||| || ||| Sbjct 38175 TTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTA 38234 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || |||||||| ||||| Sbjct 38235 ATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38272 >seq1324 Length=13147 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 ||||||| ||||||||||| | ||| || ||| || || || ||||| ||||| | Sbjct 2104 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGA 2163 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| ||||||||| || || || |||||||| || || ||||| || || || || || Sbjct 2164 TCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTGT 2223 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| ||||||||| |||||||| || || || || || || || || || || || Sbjct 2224 -CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACA 2282 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 2283 AAGATCTGCAT 2293 >seq7774 Length=1414 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 9079 CCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGCAAAGCACGCTGATC 9138 ||| || |||| || || | || |||||||| |||||||| ||||| | | |||||| Sbjct 1315 CCTGAAAACATCAAGGAAATCTACAAAACCGTCTGGGAAATCAAGCAGCGTGCCCTGATC 1256 Query 9139 GGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTA 9198 | ||||| || || | ||||| ||||| |||| ||| || || || |||| | Sbjct 1255 GATATGGCAGCTGACCGTGGCGCCTTTATCTGTCAGTCTCAGTCCTTAAATCTGTTTATG 1196 Query 9199 GCC-GCACCAACTTACGCTTTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTT 9257 | || ||| || || | | || || ||| |||| || ||||||| || | Sbjct 1195 GAAAGCCCCAGCT-ACTCCAAGCTGACCTCCATGCATTTTTATGGCTGGAAAAAAGGCCT 1137 Query 9258 AAAAACAGGCATGTACTATTTGCGCACAAAACCCGCCGCTGAACCTATCAAATTTACAGT 9317 ||||| ||||||||||| |||| |||||| | || ||||| | ||||| ||||| || Sbjct 1136 CAAAACCGGCATGTACTACCTGCGGACAAAATCTGCAGCTGACGCAATCAAGTTTACGGT 1077 Query 9318 T 9318 | Sbjct 1076 T 1076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505322046936720