Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq151 134 1e-26
seq1324 116 4e-21
seq7774 95.1 1e-14
>seq151
Length=51439
Score = 134 bits (148), Expect = 1e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||| ||||| ||||| || ||||| || ||||||||||||| | ||| |
Sbjct 38283 AGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 38342
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| ||
Sbjct 38343 CCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCC 38402
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || || || || ||| | | ||| |||| |||||||| || ||
Sbjct 38403 TTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTG 38462
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
|| || || || || || || || |||||||| ||||| |||
Sbjct 38463 ATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATCTTG 38504
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||| ||||| ||||| || ||||| || ||||||||||| | | || |
Sbjct 38055 AGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGCGTACGG 38114
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| ||
Sbjct 38115 CCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCC 38174
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || || || || ||| | | ||| |||| |||||||| || |||
Sbjct 38175 TTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTA 38234
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || || || || || |||||||| |||||
Sbjct 38235 ATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38272
>seq1324
Length=13147
Score = 116 bits (128), Expect = 4e-21
Identities = 142/191 (74%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
||||||| ||||||||||| | ||| || ||| || || || ||||| ||||| |
Sbjct 2104 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGA 2163
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
||| ||||||||| || || || |||||||| || || ||||| || || || || ||
Sbjct 2164 TCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTGT 2223
Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702
||||| ||||||||| |||||||| || || || || || || || || || || ||
Sbjct 2224 -CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACA 2282
Query 134703 AAAATTTGCAT 134713
|| || |||||
Sbjct 2283 AAGATCTGCAT 2293
>seq7774
Length=1414
Score = 95.1 bits (104), Expect = 1e-14
Identities = 167/241 (69%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 9079 CCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGCAAAGCACGCTGATC 9138
||| || |||| || || | || |||||||| |||||||| ||||| | | ||||||
Sbjct 1315 CCTGAAAACATCAAGGAAATCTACAAAACCGTCTGGGAAATCAAGCAGCGTGCCCTGATC 1256
Query 9139 GGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTA 9198
| ||||| || || | ||||| ||||| |||| ||| || || || |||| |
Sbjct 1255 GATATGGCAGCTGACCGTGGCGCCTTTATCTGTCAGTCTCAGTCCTTAAATCTGTTTATG 1196
Query 9199 GCC-GCACCAACTTACGCTTTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTT 9257
| || ||| || || | | || || ||| |||| || ||||||| || |
Sbjct 1195 GAAAGCCCCAGCT-ACTCCAAGCTGACCTCCATGCATTTTTATGGCTGGAAAAAAGGCCT 1137
Query 9258 AAAAACAGGCATGTACTATTTGCGCACAAAACCCGCCGCTGAACCTATCAAATTTACAGT 9317
||||| ||||||||||| |||| |||||| | || ||||| | ||||| ||||| ||
Sbjct 1136 CAAAACCGGCATGTACTACCTGCGGACAAAATCTGCAGCTGACGCAATCAAGTTTACGGT 1077
Query 9318 T 9318
|
Sbjct 1076 T 1076
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505322046936720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |