Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7203 360 3e-94 seq732 203 4e-47 seq4369 176 6e-39 seq3759 168 9e-37 seq75 104 3e-17 >seq7203 Length=1522 Score = 360 bits (398), Expect = 3e-94 Identities = 616/881 (70%), Gaps = 22/881 (2%) Strand=Plus/Plus Query 39302 TCTTCTTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTA 39361 |||| || |||||||| ||| ||||||||||||||| || ||||| ||||| ||||| Sbjct 650 TCTTTCTGAGACATAACACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTG 709 Query 39362 GTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttt 39421 |||||||||| || || || | ||||||||||| || ||||| || |||||||| || Sbjct 710 GTTTTGCCTTGTAACGAAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAATT 769 Query 39422 tttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATC 39481 || |||| ||||||| | | | ||| || ||||| || |||||| ||| Sbjct 770 TTATTAACTCCTAATGATTCCAAAAGGTGATCGGCCACAAACTCAATGTATTGGCACATT 829 Query 39482 ATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541 | ||| |||||| || || | ||| ||||| || || |||| || ||||||||| Sbjct 830 AGTTCGGCATTCATGCCAATCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCG 889 Query 39542 ATGTCTACGGCCTCTGTTATTA-----TCGATGTTACTACC-TCATCACTCGGT--GGAT 39593 || ||||| || ||| | | || | ||| || | |||| ||| | | | || Sbjct 890 ATTTCTACTGCATCTTTCACTAAATCGTAGATTTTCTGAGGGTCAT-ACTTGTTCTGAAT 948 Query 39594 GCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAA 39653 | ||| | | | ||| || ||||| ||||||| |||| ||| ||||| | | || Sbjct 949 GTAATTAGTATATAAC----AAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAA 1004 Query 39654 TTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGG 39713 |||| || ||||| ||||| || || ||||||| |||||| ||||| | ||| ||||| | Sbjct 1005 TTAACTCATTAGAGAATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCG 1064 Query 39714 CAGCAAAA-GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGC-AACAAGTCTCTC 39771 |||| || || || || ||||| || |||||||| | |||||||| |||| | | Sbjct 1065 -AGCAGAATGAGCCTGAGAAGAAAATACCTTCTACAACGGCAAATGCTAACAGG---CGG 1120 Query 39772 TCCGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACA 39831 || ||| | | | |||| ||||| | |||||||| ||||| ||||||||||| Sbjct 1121 TCAATAAAGTTTC-CGTTATCAATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACA 1179 Query 39832 AGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGT 39891 || || ||||| ||||||| | | || | ||| || ||||| | ||| | Sbjct 1180 CGGAATATGGTCTATGGCATTAAGCATTTTATCTCGCTCAACAGGGTCTTTGATATAAGA 1239 Query 39892 ATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTA 39951 ||| || | || || |||||||||| |||||||| ||| ||||| || || || Sbjct 1240 ATCAATCAGAAGCGAGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATA 1299 Query 39952 AAAACATCTTGCTTCAGTAATTTGTACCTCTGA-ACAAAATCTTTCCGCCAAATTTTCAT 40010 |||||| ||||||| | || |||||| || | ||||| | | ||||| ||||||| Sbjct 1300 GAAACATTTTGCTTCGGCAAATTGTACACGAGAGATAAAAT-TGACTGCCAAGTTTTCAT 1358 Query 40011 TCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCAT 40070 | || || |||||| ||| |||||||| ||||||||||| |||||||| ||| Sbjct 1359 TAACGATACCATCAGAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCAC 1418 Query 40071 CGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 40130 | ||| | | |||||| || | ||| ||||| |||| |||||| ||||||| Sbjct 1419 CATCGCTCAGGCTTTCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCC 1478 Query 40131 AAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCA 40171 | || || ||||| ||||| || | | ||| |||||| Sbjct 1479 AGAATGAAGCCTCATGTTTTTTATAAAATTGCCAGATATCA 1519 >seq732 Length=22061 Score = 203 bits (224), Expect = 4e-47 Identities = 420/618 (68%), Gaps = 9/618 (1%) Strand=Plus/Plus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | ||| || ||||| || | ||||||||||| |||||| | ||||| || | Sbjct 8955 ACATGAGGCACGCAAAGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGA 9014 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCA 39727 | |||| |||||||| ||||| ||||| || |||||||| || | |||| || || || Sbjct 9015 AGCTGAGGCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAGATCG-AGCAGAACGAGCCC 9073 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 || ||||| |||||||| || | |||||||| | || | ||| ||| || || Sbjct 9074 GAGAAGAAAATGCCTTCGACCGAGGCAAATGCCAGCAGCCGCTCCGCGT-ACGAAGATAC 9132 Query 39788 TTATGTAT----CCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 || || | |||||| | ||||||| |||||||| ||||| || || || || Sbjct 9133 TTGTGGGTCGCACCACTTGAGCGCCCAATTGGCTTTCTTTCGAACACACGGGATGGTCTC 9192 Query 39844 TATAGCATTAAAGAGATAAT-GTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902 || || | || | || || | | || | ||||||| || || || || | || Sbjct 9193 AATCGCGCGCAGAAGGTGATCCTTCTCCGTCGC-CTCTTTAATGTACGTGTCAATGAGCA 9251 Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG 39962 | ||| | ||| || ||||||||||||||||| ||||| || || ||||| || | | Sbjct 9252 GCGAATAGACTTCCGAGTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAG 9311 Query 39963 CTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 |||| | | ||| || || | ||| | |||| ||| || ||||| || |||| Sbjct 9312 CTTCCGGCACTTGCACTTCATTGCTAAAGTTCATGGCCAGATTCTCGTTCACAATGCCAT 9371 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 |||| || ||||| || || | ||||| || ||||| | |||| | || | | Sbjct 9372 CACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGT 9431 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | |||||| |||| ||| | | |||| || ||||| ||||| ||||| || | Sbjct 9432 TCGCCCAGTCCTTGAGATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTT 9491 Query 40143 CTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTAT 40202 | ||||| |||||||| | ||| | || | | ||| || ||||| | ||||| | | Sbjct 9492 CCGCCTTCTTGTACATCTGCCACACGTCGTGCTCTTGGATCGGAAAGAGCACAAAGCGGT 9551 Query 40203 TTGGATTTTTTGCAAGGA 40220 | || || || |||||| Sbjct 9552 TGGGGTTCTTCACAAGGA 9569 >seq4369 Length=2652 Score = 176 bits (194), Expect = 6e-39 Identities = 402/599 (67%), Gaps = 21/599 (4%) Strand=Plus/Minus Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 || || |||||||||| ||| || || | | ||| ||||| ||||| || || | || Sbjct 2617 GCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACCT 2558 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATG 39739 ||||||| |||||| ||||| | |||| | || | | |||| || || ||||| || Sbjct 2557 GGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATATC 2498 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCAC 39799 || || || || || |||| || | ||| | | |||| | | | ||||||| Sbjct 2497 CCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAA---TGTACCCTCTTCTATCCAC 2441 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 ||| ||||||| | ||||||||| | || || || |||| || ||| || | Sbjct 2440 TTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAG-ATTGAA---A 2385 Query 39860 TAATGT----TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915 ||| | ||||| | ||| |||| ||||||||| || || ||| || | || Sbjct 2384 TAACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCTC 2325 Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTG 39975 | ||| |||||||| ||| ||||||||||| || | ||| | ||| || | | || Sbjct 2324 AGCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTG 2265 Query 39976 TACCTC-TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAA 40034 ||||| | | ||||| | | || | || ||||| ||||| ||||| ||| |||| Sbjct 2264 CACCTCTTTCATAAAAT-TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAA 2206 Query 40035 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT----TATTCCAG 40090 | || ||||| | ||| ||| |||| | ||||||| ||| || | ||||| Sbjct 2205 AGAACGCCAAAATATGCGAAATGAAATGTCTTTCATC----ATCATTTAGCCTTTTCCAA 2150 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || | || | || | ||| | ||||||||| |||||||| ||||| || || ||| Sbjct 2149 TCCGCAAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTT 2090 Query 40151 TTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 || |||| | |||||||||| || | || ||| | | ||||| | || ||||| Sbjct 2089 TTATACAACTGCCATATATCATCATGCTTGATGGGATATAGGACAAACCGATCCGGATT 2031 >seq3759 Length=3256 Score = 168 bits (186), Expect = 9e-37 Identities = 601/929 (65%), Gaps = 23/929 (2%) Strand=Plus/Minus Query 69271 GCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCT 69330 |||||||| || || || || ||||| ||| | || | | | | || | ||||| Sbjct 1796 GCTACAGAAGCCAGGTTGCACACTGCAGTCTCGTCAGGAGTGGAAACTTCAAAAATCTCA 1737 Query 69331 GTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAG 69390 ||| |||||||| |||| || || | ||||| ||||||||| ||||| || Sbjct 1736 TGACAAAGATTACTGGATTTAATGACACCGATATTTTTCTGATTACTTTTTTTATTCACT 1677 Query 69391 GCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATT-- 69448 || ||||| || ||| |||||||||| || || ||||| | || | || || Sbjct 1676 GCATCCTTATACCCGATATACGGAGTACCCGTCTCGATCTGTGCCTCAAG--TACCTTCA 1619 Query 69449 TCCAAACGACCCTAGCATTTATTAC--GGTCTTGTAACGCTTCTCTTTTTCATATTGTGT 69506 |||| | | | | ||| || || || | ||| | | |||| | | |||| | Sbjct 1618 TCCACAGGTCACGAGCTTTGATCACTCGATCTGCTTTCCCTTCACGCT--CATACCGCTC 1561 Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGA-CATTCATTTGGAC 69565 ||||| || ||| || ||||| | |||| | | ||| || |||| || | Sbjct 1560 ATATAAATTTTTGAAATCGTCTCCATACACATTTGCAAGTCCTGGGGCATTTGCCGGGTC 1501 Query 69566 ACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAA 69625 | | || |||| | |||| |||| || | |||||||||||| || | ||||| Sbjct 1500 AAA-CAGACACCAATCGGCATCGGCCTTTACCTTCTCCATAAATAGATCTGGCACCCAAA 1442 Query 69626 GAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGA 69685 | | ||| | |||||| | || ||||||| ||||| |||||| |||||| | Sbjct 1441 GTCCGTAAAACAAATCTCTCGCTCGCATTTCTTCTTTTCCATGATTTTTACGAAGATCCA 1382 Query 69686 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTT 69745 ||||||| | ||||| | |||||| || || |||||||| || | |||||| || Sbjct 1381 GAAACTCAAAGATATCTGCATGCCAAGGCTCCAGATATATAGCAAATACTCCCTTTC--- 1325 Query 69746 TATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAA 69805 | |||||| ||||||||| ||||| ||||| | || | || | ||||| || | | Sbjct 1324 TTTTTCCTGCCTGATCTACATATCTCGCAGTTTCGTTGAACACACGAAGCATAGGCACGA 1265 Query 69806 TACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAA 69865 ||||| ||| ||| || |||| ||||| || | ||| ||||||| | || Sbjct 1264 TACCAGAAGAGACACCGTTGTTTCCTTTGATATACGAACCGCGTGCACGAATATCATGAA 1205 Query 69866 TA--GATAGACCTATTCC---TCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGT 69920 || | |||| | || || | | || || || |||||| |||||| || Sbjct 1204 TATGAACAGAC--AACCCAGAACCAGAC---TTGGAAATAAGAGCAGTCTCTTTCAAAGT 1150 Query 69921 GTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTG 69980 |||||| || || || | || || || |||| | ||||||||| |||||| || Sbjct 1149 GTCATAAATCCCATCCAGACTGTCGTCCTTCATAGCCACTAGAAAACAGGAAGACATCTG 1090 Query 69981 ATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA 70040 | | || |||| || | ||||| ||||||| ||| || || || || || | || Sbjct 1089 AGGCTGCGTAGTACCAGAGTTAAACAATGTAGCAGAGGCATGGGTAAATAATCCCTGCGA 1030 Query 70041 AAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGAC 70100 | || || || || || || | ||||| | ||||| || | || || Sbjct 1029 CATCATATCATAGGTACGAAGCGCGCTCTGAATATCTTCTTTGTGAATACCAAGAGCTAC 970 Query 70101 ACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGA 70160 | ||| | || |||||| || || |||||| || ||||| ||||| | | || Sbjct 969 CCTCATAAGCAAATGCTGCGGGCGCTCTACCACTTCCTTATTCATTTTTAGTAAATAACT 910 Query 70161 TTTTTCCAGAGTTTTAAACCCAAAATAGT 70189 || |||| |||||||| |||||||||| Sbjct 909 CTTCTCCAATGTTTTAAATCCAAAATAGT 881 >seq75 Length=61118 Score = 104 bits (114), Expect = 3e-17 Identities = 411/644 (64%), Gaps = 2/644 (0%) Strand=Plus/Plus Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 || ||| |||||||||||| | ||| |||| | ||| | | || |||||||| Sbjct 21636 CCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATG 21695 Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 ||||||||||| | ||| | || | || | || | | | || |||||| || Sbjct 21696 AATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCA 21755 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 |||||| | |||||||||||| | | || | ||||| ||||| | || ||| Sbjct 21756 TGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATC 21815 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | ||| ||||| || || ||||| | ||||| || |||| |||| | Sbjct 21816 GCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAAC 21875 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 || | ||||| || ||||| || || || ||||| || || ||| || || Sbjct 21876 ACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGAATGTAGCTATTC 21935 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 | || || ||||| ||| | || || ||||||||| ||| || || ||| Sbjct 21936 GTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGCA 21995 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAAA 69965 || ||||||| || ||||| || || || ||| ||||||| |||| | || || ||| Sbjct 21996 CATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAA-AAA 22054 Query 69966 ACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGT 70025 || ||||| ||| | | || || |||||||| | || || | || || || Sbjct 22055 GCACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGT 22114 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATG 70085 || | || | || | | | |||||||| | || | || ||| | ||| Sbjct 22115 AAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATG 22174 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 || || |||||||| || | | ||| || || || ||||| || |||| || | Sbjct 22175 GATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGAC 22234 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGT 70189 |||| || | ||| || ||||||||||||||||||| Sbjct 22235 CCGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGT 22278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686805025253040