Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq5020 100 6e-16 seq4687 93.3 9e-14 seq2657 84.2 5e-11 >seq5020 Length=2230 Score = 100 bits (110), Expect = 6e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 210921 TGGCGGTGAAGGTGAGATTTGAACTCACGGAGGACTTTCGCCCTCGACGGTTTTCAAGAC 210980 |||||| |||||||||| ||||||||||||| | | |||||||| ||||||||||| Sbjct 1213 TGGCGGAAGAGGTGAGATTCGAACTCACGGAGGGCGTGAACCCTCGACAGTTTTCAAGAC 1272 Query 210981 CGTTGCATTAAACCGCTCTGCCACT 211005 || ||||||||||||||||||||| Sbjct 1273 TGTAGCATTAAACCGCTCTGCCACT 1297 >seq4687 Length=2411 Score = 93.3 bits (102), Expect = 9e-14 Identities = 197/290 (68%), Gaps = 12/290 (4%) Strand=Plus/Plus Query 332024 AAAACGACGAGTTAATGCACTATCTTTCTCGATATTTTTACGATATTCATCATATGTTGT 332083 ||| ||||| |||||| ||||| || || | || ||||||||| | | ||| || Sbjct 1452 AAAGCGACGTTCTAATGCTGCGTCTTTTTCTATGTATTGACGATATTCTTTAAGTGTAGT 1511 Query 332084 TGCACCAATTACACGAATCTCACCACGTGAAAGTGCTGGCTTAAGCATATTGCTCATGTC 332143 || || |||||||| || | ||| || | | |||||||| |||| ||||| || Sbjct 1512 AGCTCCTATTACACGTATTTGACCGCGAGCTAAAGCTGGCTTGAGCAGATTGCCTGCATC 1571 Query 332144 CATAGAACCATTACTTGCGGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAAC 332203 ||||||| | ||| || ||||| || || ||| | || | || || || |||| Sbjct 1572 TGTAGAACCTTCACTGGCC---CCAGCTCCTACGATAGTGTGGAGCTCGTCTAT--AAAC 1626 Query 332204 AATAGTATTTT-----CACGTTTCTTTAGTTCTTTTAGCAAAT-TGTCGATGCGTTCTTC 332257 || | || ||| || ||| | | ||||| | || | | || || |||||||| Sbjct 1627 AAAATTACTTTACCTTCAGCTTTTTCCACCTCTTTCAACACAGCTTTCAAT-CGTTCTTC 1685 Query 332258 AAATTCACCACGATACTTAGTACCAGCAGTCAATGCACCAACATTTAGTG 332307 ||||||||| ||||| || | |||||| | | ||| || | || ||||| Sbjct 1686 AAATTCACCTCGATATTTTGCTCCAGCAATAAGTGCTCCCATATCTAGTG 1735 >seq2657 Length=5334 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/94 (81%), Gaps = 4/94 (4%) Strand=Plus/Plus Query 209108 TTGGCAGTGAGTGTGGGATTCGAACCCACGATAC-GCTTT---CGCATATGCTACCTTAG 209163 ||||| ||||| | ||||||||||||| |||||| | ||| | |||||||| |||||| Sbjct 4796 TTGGCGGTGAGCGAGGGATTCGAACCCTCGATACAGGTTTAAGCCCATATGCTTCCTTAG 4855 Query 209164 CAGGGTAGTGATTTCAACCACTCATCCAACTCAC 209197 ||||| |||| ||| ||||||| ||| ||||| Sbjct 4856 CAGGGAAGTGCCTTCGACCACTCGGCCAGCTCAC 4889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113657921274128