Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7203 199 3e-46 >seq7203 Length=1522 Score = 199 bits (220), Expect = 3e-46 Identities = 512/758 (68%), Gaps = 45/758 (6%) Strand=Plus/Minus Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894 |||||||| ||| || ||||||||||||||||| || || || || |||||||| Sbjct 1410 CATTTTATTTCTCATGTATTGGCGTTTTTTGCTGCTTCTGATGGTATCGTTAATGAAAAC 1351 Query 43895 TTGGTTAGTCGGTTTG--CGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGT 43952 |||| |||| ||| | | | || ||||| | |||||| |||||| ||||| | Sbjct 1350 TTGGC-AGTCAATTTTATCTCTCGT-GTACAATTTGCCGAAGCAAAATGTTTCTATGGTT 1293 Query 43953 TTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACA 44012 | || ||| || ||||| |||||||| |||| ||| |||||||| ||| | || | Sbjct 1292 TCCAGATTATGATGGAAAACATTCATTCAGAAACTTACTCGCTTCTGATTGATTCTTATA 1233 Query 44013 TCAAAGA---TGGGCA-CGAGAAGCATCGATTGTTTAATGCGATAGAA-ACAGTACCTGC 44067 ||||||| || | ||||| | | || ||||||| ||||| | | | | || Sbjct 1232 TCAAAGACCCTGTTGAGCGAGA----TAAAATGCTTAATGCCATAGACCATATTCCGTGT 1177 Query 44068 GATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGA 44127 | | || | ||||| || ||||| | ||||| || || || |||| || Sbjct 1176 G-TAAAGAAAAAAGCCGATTGGGCTTTGCGTTGGATTGAT--AACGGAAACTTTATT-GA 1121 Query 44128 ACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCA 44186 || || | || ||||| ||||| ||||| |||||||| ||||| || || ||| | | Sbjct 1120 CCGCCTGTTAGCATTTGCCGTTGTAGAAGGTATTTTCTTCTCAGGCTCATTCTGCT-CGA 1062 Query 44187 TATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAA 44246 |||| ||||| || ||||| ||||| ||||| || | || || || ||||||||||| Sbjct 1061 TATTCTGGTTGAAAAAACGTGGTTTAATGCCGGGTCTTACATTCTCTAATGAGTTAATTT 1002 Query 44247 GTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGT----TACT-TGGATATCTAGG 44301 |||||||||||||||||| | || ||||| || |||| |||| | || || Sbjct 1001 CTCGTGATGAAGGCTTACACCGTGACTTTGCCTGTTTGTTATATACTAATTACATTCAGA 942 Query 44302 AGACG-ATAAGCCTTCATGTAAGACAAT-TACAGATATTGTTGTAGAGGCAGTAAAGATA 44359 | | | || | || | ||| ||| ||| ||| | || ||| |||||| | || Sbjct 941 ACAAGTATGACCC------TCAGAAAATCTAC-GATTTAGTGAAAGATGCAGTAGAAATC 889 Query 44360 GAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT---GAACTT 44416 ||| ||||||| | || || ||||||| || || || |||||| |||| Sbjct 888 GAAAAAGAATTCGTAACTGATGCGCTACCTGTTTCGTTGATTGGCATGAATGCCGAAC-- 831 Query 44417 TTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGA---ACTGGGTTGC 44473 | ||| |||||| ||||| | | || |||| |||||||| | | || Sbjct 830 -TAATGTGCCAATACATTGAGTTTGTGGCCGATC---ACCTTTTGGAATCATTAGGAGTT 775 Query 44474 GATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGC 44533 ||||| |||| || || || || ||||| ||||| | |||||||| ||||| Sbjct 774 AATAAAATTTATAATGCGACCAATCCTTTCGATTTCATGGATATGATTTCGTTACAAGGC 715 Query 44534 AAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 ||||| || || || |||||||| || || ||||| || Sbjct 714 AAAACCAATTTCTTCGAAAAACGTGTAGGTGAATACCA 677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397397455476430