Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq3272 163 3e-35 >seq3272 Length=3937 Score = 163 bits (180), Expect = 3e-35 Identities = 186/252 (74%), Gaps = 12/252 (5%) Strand=Plus/Minus Query 58102 CGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTCAGTTATCTCGATTACGT 58161 |||||||||| | || |||||||||||||||||||||||| | ||| || || |||| Sbjct 2022 CGGCTGTAAATCCGGCCTGGTATTCAACCCGGCAACGCCGTTGCATTACCTGGACCACGT 1963 Query 58162 CATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCAGTC 58221 ||||| ||| | || ||||| |||||||||| |||||||| || || ||||||||| Sbjct 1962 GATGGATAAAGTCGACATGATCTTGCTGATGTCGGTGAACCCGGGTTTTGGCGGCCAGAA 1903 Query 58222 TTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGTCGCCGCATTGATGCGT---- 58277 |||||||| | |||||| | ||| | |||| |||| || |||||||| | Sbjct 1902 GTTTATTCCTGAAACGCTGAACAAATTAAAAGAAGCGCGTGCACGTATTGATGCTTACTA 1843 Query 58278 --------CCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAACAATAT 58329 |||| | | || | |||||||| |||||||||||||| | ||||||||| Sbjct 1842 CGAAAAAACCGGCCGCCAGATCTGGCTGGAAGTAGACGGCGGCGTGAACGCGAACAATAT 1783 Query 58330 CGGCGAGATCGC 58341 || |||||||| Sbjct 1782 CGCTGAGATCGC 1771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471170407175280