Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq6103 100 8e-17 >seq6103 Length=1793 Score = 100 bits (110), Expect = 8e-17 Identities = 176/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 41205 GATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATCGCCACA 41264 || |||||| | || | ||||| | || | |||||||| || | || || || || Sbjct 580 GACCCAGAAGTGCGCTTTATGCCGAATGGTGAAGCGGTTGCCAACTTCAGTATTGCGACG 521 Query 41265 ACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGC 41324 ||||||| |||||| || || | |||| ||| | ||| |||| ||||||||| Sbjct 520 ACTGAAAACTGGAAAGACAAGTCA---GGCGTCAAGCAGGAAAAAACCGAATGGCACAAT 464 Query 41325 GTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAG 41384 |||| || | | || ||||| || || ||| | ||||||||| ||||| | | Sbjct 463 ATTGTGATTTATCGCAAACTGGCCGAGATCGCTGGTGAATACCTGAAAAAAGGCCGTCCG 404 Query 41385 GTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGTTGATCGC 41444 || | |||||||||| | |||| ||| || || ||| || | | |||||| || Sbjct 403 GTCTACATTGAAGGCCGTCTGCAAACCCGCAAGTGG---GAAAAAGATGGCGTGACCCGT 347 Query 41445 TACACCACTGAAATC 41459 ||||||||||||||| Sbjct 346 TACACCACTGAAATC 332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133190481591696