Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq3759 179 5e-40
seq4369 154 2e-32
seq7156 132 6e-26
seq732 111 2e-19
seq12085 87.8 2e-12
seq12082 87.8 2e-12
seq6184 87.8 2e-12
seq692 82.4 1e-10
>seq3759
Length=3256
Score = 179 bits (198), Expect = 5e-40
Identities = 533/809 (66%), Gaps = 15/809 (2%)
Strand=Plus/Minus
Query 110356 CTTTGAT-CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCA 110414
||||| | |||||||||||||| || || |||||||| | || ||| || || | ||||
Sbjct 2671 CTTTGGTACGGAGATAGTACATACCCGTTTTGAGTCCCTTTTCCCACGCATAGAAGTGCA 2612
Query 110415 TAGAAGAGAGCTTGGACATCGTT-GGACTTTCCATGAAGAGGTTCATACTTTGACTTTGG 110473
| |||| |||||| | || ||| ||| | | || || ||||||||||| | ||
Sbjct 2611 TGGAAGTGAGCTTCG-CAAAGTTAGGATCTGATACAAAAAGATTCATACTTTGCCCCTGA 2553
Query 110474 TCAATGAA-GCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCA 110532
|| | | || || | || ||| ||||||||||| | | | |||| | | |||||
Sbjct 2552 CAAACGTATGCACCTCTGTC-TGCAGCCATATCAATAATAGCTCTCATGCTGAGCTCCCA 2494
Query 110533 AACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACC 110592
||| || |||| |||||| || || || ||||||||||||||||| |||||
Sbjct 2493 GCTTGTTTTGTAAAGATCACGGATATCTTCCGGTATCTCTGAGATATTCTGGATAGAACC 2434
Query 110593 CCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTC 110652
| | | || || ||||| |||| ||| |||| | || | ||
Sbjct 2433 GTCATGTGTAATAATTTTGTCACGGATATCTTTGGTCCAAAGACTTAGTGACTCCAAATC 2374
Query 110653 ATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGAT 110712
||| ||||| ||||| || |||| ||| || |||| | | | || || |
Sbjct 2373 TCGGACTAGGTGTTTGTTCACTATGATAAATTCTCCTGACAATACGCGACGAAGATAAAG 2314
Query 110713 GTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGT 110772
|| | || ||||| |||||||| || || ||||||||||| ||| | ||| ||| ||
Sbjct 2313 ATTGGAAGTATATGGCTCAAAGCACTCGTTGTTACCCAAGATCTGTCCACTGGTGGCAGT 2254
Query 110773 TGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTG-A 110831
||||| || || | |||| ||| || | ||| | |||||| || | | | | |
Sbjct 2253 AGGCATCAAGGCGATAAGAAGAGAGTTTCGCACACCATGCTCCTTTAT-CTTATTTCGCA 2195
Query 110832 GAACATCCCAGTCGTA-GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACC 110890
| ||| |||||| | | || || ||| || ||||||| |||||||||| ||
Sbjct 2194 AAGCATTCCAGTCCCACCTACTACTAGGAGTCA-CTCCCCACATATCAAACTGAAATACA 2136
Query 110891 CCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTT---GGGCTTCAGCCAAT 110947
|| ||||| |||||||| || |||||||||||| ||||| | ||| || |
Sbjct 2135 CCCTGGGAAATAGGAGAACCTTCGTAGGTTTCATAGGTACCTTCACGAGCT---GCAATA 2079
Query 110948 TCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCC 111007
||||| || || | || | |||||||| || ||||| | ||| | || |
Sbjct 2078 TCACAAGAAGCAGAAAGTGCCGCATAGTACATGGTCTCGAAGATCTCACGATTGAGCTGC 2019
Query 111008 TTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGA 111067
| |||| || || ||||| | || | || ||||| |||| || || || ||
Sbjct 2018 TGCGCTTTCTCCGAGTCAAAAGGATATCTAAGCAGGATAAACGCATCAGCAAGTCCCTGC 1959
Query 111068 ACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAA 111127
|| || | || | || | ||||||||||| || | |||| |||||| || ||||||
Sbjct 1958 ACTCCAAGTCCCACTGGGCGATGTCGCATATTGGAAGTACGCGTAGTCTCCACTGGATAA 1899
Query 111128 AAATTTCTGTCAATGACTCGGTTTAGATT 111156
|||| ||||| ||||| || | |||
Sbjct 1898 TGATTTTGATCAATCACTCGATTCATATT 1870
>seq4369
Length=2652
Score = 154 bits (170), Expect = 2e-32
Identities = 351/523 (67%), Gaps = 10/523 (2%)
Strand=Plus/Minus
Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736
|| || || || ||||| | |||||| ||||| | ||||||||| | ||| || ||
Sbjct 2599 CCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACCTGGCATTAAACCACGTTTT 2540
Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796
|||||||||||||||| ||||| | || |||||||| || |||||||| | ||
Sbjct 2539 TTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATATCCCCTCCACCGCCATGAAG 2480
Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856
|||| || || || || || | | || | || | ||| |||| |||||||||
Sbjct 2479 GCAATGAGACGCTCAGCAAATG---TACCCT---CTTCTATCCACTTCAGTGCCCATTTT 2426
Query 122857 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAGAT 122916
|| |||||| |||| || | ||| | | | || |||||||| ||||||
Sbjct 2425 GCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAATAACTTGGCCTTTTCTACC 2366
Query 122917 CCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTT-CATT 122975
|||| ||||| ||| | |||||||| || || || || |||| | ||| |||
Sbjct 2365 GCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCTCAGCATGTATGTTTTCCATC 2306
Query 122976 ATGGCAT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCGCAAAAT 123034
||| || ||| || | |||| | || || || | ||| ||||| | | |||||
Sbjct 2305 ATG--ATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTGCACCTCTTTCATAAAAT 2248
Query 123035 TGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGTACT 123094
| | | |||||| || || ||||| | | |||||||| |||| || | |
Sbjct 2247 TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAAAGAACGCCAAAATATGCG 2188
Query 123095 TTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGGACAAAT 123154
||||| | |||||| ||||| || | ||||| || ||| || | ||||||||
Sbjct 2187 AAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCCGCAAAGTCATCGGACAAAT 2128
Query 123155 CAACTTCTTCCGCAGTCCAATTGCTCATTTGAGCCTTTTTATA 123197
||| |||||| ||||||||| | | || ||| ||||||||
Sbjct 2127 CAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTATA 2085
>seq7156
Length=1532
Score = 132 bits (146), Expect = 6e-26
Identities = 253/371 (68%), Gaps = 4/371 (1%)
Strand=Plus/Minus
Query 11446 CTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGT 11505
|| ||| |||||||| || || || | | || | ||| || | ||| | || |||||
Sbjct 603 CTGGCGGTCAAAACGGCCTGGACGTAACAATGCTTTATCCAGCACATCTGCACGGTTAGT 544
Query 11506 GGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTG 11565
|| ||||| || | | ||||| | ||||| |||||||||||| || | ||
Sbjct 543 CGCAGCAATCACGATCACGCCAGAATTCGCTTCAAAACCATCCATCTCGACCAGCATCTG 484
Query 11566 ATTAATTGTTTGTTCTCTCTCATCATT--TGCTGGCATACCACCAGCACTGCGTTGCTTG 11623
|| | ||| ||||| | |||||| || || | | | |||||||| ||| || |
Sbjct 483 GTTCAATGTCTGTTCACGCTCATCGTTACCGCCGCC--AGTACCAGCACCGCGATGACGG 426
Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683
|| ||||| || |||||||| || || || ||||| ||| ||||| |||| |||||
Sbjct 425 CCAACCGCGTCGATCTCATCGATAAATACGATACAAGGTGCATTTTTCTTGGCGTTTTCA 366
Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743
|| | || || || | |||||||| || |||||||| || ||||||| | |
Sbjct 365 AACATGTCACGCACACGCGCAGCACCCACGCCGACAAACATTTCTACAAAGTCAGAACCG 306
Query 11744 GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803
||| || ||| || || || | |||||| || || || ||||| || ||||| ||
Sbjct 305 GAGATGCTGAAGAAGGGCACTTTGGCTTCACCGGCAATCGCACGGGCCAGCAGGGTTTTA 246
Query 11804 CCCGTACCTGG 11814
|| ||||| ||
Sbjct 245 CCAGTACCCGG 235
>seq732
Length=22061
Score = 111 bits (122), Expect = 2e-19
Identities = 328/499 (66%), Gaps = 10/499 (2%)
Strand=Plus/Plus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
|| || || || |||||||| || ||||| ||||| || | ||| || | |||||
Sbjct 8678 TACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCATC 8737
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490
|||||||||| ||||| || | |||| | ||| || | | | || ||
Sbjct 8738 CAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAGTACAACAGGCGG 8797
Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550
|||| ||| |||||||||||| | |||| | | |||||||| || || || | |
Sbjct 8798 TCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAACG 8857
Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 122610
|| || | |||| | ||| | | ||| ||| || || || | ||| | ||||
Sbjct 8858 GGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGAATGATCGTGTGG 8917
Query 122611 ATAGTTTC----GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666
| || || || || | || || | | | ||| |||| |||| ||
Sbjct 8918 ACGCGGTCCTCGGGCAGCTTGTTCACTA-GCTTGGAGTACATGAGG--CACG-CAAAGTC 8973
Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726
| ||| | ||||||||||| ||| || || || ||||||| || || ||||||||
Sbjct 8974 CGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAG 9033
Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786
||| |||||||||| |||| | || | |||||| || || |||||||| || || || ||
Sbjct 9034 ACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGAC 9093
Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTT-TGCATCAAACCATTTCA 122845
| ||||| || | || || || ||| | || || |||| || || |||| || |
Sbjct 9094 CGAGGCAAATGCCAGCAGCCGCTCCGCGTACGA-AGATACTTGTGGGTCGCACCACTTGA 9152
Query 122846 TTGCCCATTTCGCCTTCTT 122864
||||| || || |||||
Sbjct 9153 GCGCCCAATTGGCTTTCTT 9171
>seq12085
Length=2098
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341
|||||||| ||||| |||||| |||| ||||||||||||||| | | || |||||| |||
Sbjct 563 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCATATC 622
Query 145342 CAGGTAGGAGCTT 145354
| |||||||||||
Sbjct 623 CCGGTAGGAGCTT 635
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341
|||||||| ||||| |||||| |||| ||||||||||||||| | | || |||||| |||
Sbjct 718 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCATATC 777
Query 145342 CAGGTAGGAGCTT 145354
| |||||||||||
Sbjct 778 CCGGTAGGAGCTT 790
Score = 82.4 bits (90), Expect = 1e-10
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341
|||||||| ||||| |||||| |||| ||| || |||||||| | | || ||||||||||
Sbjct 222 GCTCTTATGGTGTAATGGTCAGCACTCTGGGCTCTGAATCCAGCGATCCGGGTTCAAATC 281
Query 145342 CAGGTAGGAGCTT 145354
| |||||||||||
Sbjct 282 CCGGTAGGAGCTT 294
>seq12082
Length=1675
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 735 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 794
Query 145342 CAGGTAGGAGCTT 145354
| |||||||||||
Sbjct 795 CCGGTAGGAGCTT 807
>seq6184
Length=1767
Score = 87.8 bits (96), Expect = 2e-12
Identities = 245/368 (67%), Gaps = 6/368 (2%)
Strand=Plus/Minus
Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509
|||||||| || || || || || || || ||||| | ||| | ||| ||||
Sbjct 389 CGATCAAATCGCCCTGGACGTAGAAGAGCAGGGTCAAGTACATCAGGTCTATTTGTGGAA 330
Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569
|| || || | || | || || ||||| |||||||| || || || | |||||
Sbjct 329 GCCATTACGATAACGTTTGTATCCACTTCAAATCCATCCATTTCTGTAAGGATCTGATTG 270
Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGG-CATACCACCAGCACTGCGTTGCTTGCCCAC 11628
| |||||||| | |||||||| | || | ||| ||||||| || || || ||
Sbjct 269 AGAGTTTGTTCGCGCTCATCATGTCCTCCACCTACT-CCAGCACCACGCTGACGACCTAC 211
Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGG-GCGATTTCAAAGA 11687
||||| || ||||| || |||| |||| | || | | ||| || ||| |||||
Sbjct 210 AGCATCTATTTCATCTATAAAGATAATAGAAGGCGCAGTA-CGCTTTGCTTTTTTAAAGA 152
Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG- 11746
| || | || | ||||| ||||| ||||||||||||||||| | | |||||
Sbjct 151 GGTCTCTTACTCGAGATGCACCTACACCTACAAACATCTCCACAAACTCAGAACCAGAGA 92
Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806
| || | || || |||| | ||| || || | || ||||| || || ||||| ||
Sbjct 91 TAGTGTA-AAAAGGAACATCAGCTTCTCCTGCTACTGCACGGGCTAGAAGTGTCTTACCA 33
Query 11807 GTACCTGG 11814
|| |||||
Sbjct 32 GTTCCTGG 25
>seq692
Length=44129
Score = 82.4 bits (90), Expect = 1e-10
Identities = 158/231 (68%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 11625 CCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 11684
|||| || ||||||||||||||||| ||||| || || || | || || | |
Sbjct 37484 CCACTGCGTCAATCTCATCAATGAAAACAATGCACGGAGCGTTCGCACGAGCTTCCTTGA 37425
Query 11685 AGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAG 11744
| || ||||| || | | ||||||||||| |||||||| | ||| | || |||
Sbjct 37424 ACAGGTCGCGCACACGGGATGGGCCCACACCAACGAACATCTCGATAAAATCTGATCCAG 37365
Query 11745 AGCACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11802
| | || | ||| ||||| | | |||||| || ||||| || || || |||||
Sbjct 37364 A--AATGCTAAAGAACGGGACGCTAGCTTCACCGGCAGTGGCTTTCGCCAGCAGCGTCTT 37307
Query 11803 TCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853
||| ||||| ||| || | || ||||| || ||||||||||||||
Sbjct 37306 TCCTGTACCAGGCGGGCCTACCAGCAGGGCACCCTTCGGGATCTTGGCACC 37256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627937120065600
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