Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3759 179 5e-40 seq4369 154 2e-32 seq7156 132 6e-26 seq732 111 2e-19 seq12085 87.8 2e-12 seq12082 87.8 2e-12 seq6184 87.8 2e-12 seq692 82.4 1e-10 >seq3759 Length=3256 Score = 179 bits (198), Expect = 5e-40 Identities = 533/809 (66%), Gaps = 15/809 (2%) Strand=Plus/Minus Query 110356 CTTTGAT-CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCA 110414 ||||| | |||||||||||||| || || |||||||| | || ||| || || | |||| Sbjct 2671 CTTTGGTACGGAGATAGTACATACCCGTTTTGAGTCCCTTTTCCCACGCATAGAAGTGCA 2612 Query 110415 TAGAAGAGAGCTTGGACATCGTT-GGACTTTCCATGAAGAGGTTCATACTTTGACTTTGG 110473 | |||| |||||| | || ||| ||| | | || || ||||||||||| | || Sbjct 2611 TGGAAGTGAGCTTCG-CAAAGTTAGGATCTGATACAAAAAGATTCATACTTTGCCCCTGA 2553 Query 110474 TCAATGAA-GCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCA 110532 || | | || || | || ||| ||||||||||| | | | |||| | | ||||| Sbjct 2552 CAAACGTATGCACCTCTGTC-TGCAGCCATATCAATAATAGCTCTCATGCTGAGCTCCCA 2494 Query 110533 AACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACC 110592 ||| || |||| |||||| || || || ||||||||||||||||| ||||| Sbjct 2493 GCTTGTTTTGTAAAGATCACGGATATCTTCCGGTATCTCTGAGATATTCTGGATAGAACC 2434 Query 110593 CCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTC 110652 | | | || || ||||| |||| ||| |||| | || | || Sbjct 2433 GTCATGTGTAATAATTTTGTCACGGATATCTTTGGTCCAAAGACTTAGTGACTCCAAATC 2374 Query 110653 ATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGAT 110712 ||| ||||| ||||| || |||| ||| || |||| | | | || || | Sbjct 2373 TCGGACTAGGTGTTTGTTCACTATGATAAATTCTCCTGACAATACGCGACGAAGATAAAG 2314 Query 110713 GTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGT 110772 || | || ||||| |||||||| || || ||||||||||| ||| | ||| ||| || Sbjct 2313 ATTGGAAGTATATGGCTCAAAGCACTCGTTGTTACCCAAGATCTGTCCACTGGTGGCAGT 2254 Query 110773 TGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTG-A 110831 ||||| || || | |||| ||| || | ||| | |||||| || | | | | | Sbjct 2253 AGGCATCAAGGCGATAAGAAGAGAGTTTCGCACACCATGCTCCTTTAT-CTTATTTCGCA 2195 Query 110832 GAACATCCCAGTCGTA-GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACC 110890 | ||| |||||| | | || || ||| || ||||||| |||||||||| || Sbjct 2194 AAGCATTCCAGTCCCACCTACTACTAGGAGTCA-CTCCCCACATATCAAACTGAAATACA 2136 Query 110891 CCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTT---GGGCTTCAGCCAAT 110947 || ||||| |||||||| || |||||||||||| ||||| | ||| || | Sbjct 2135 CCCTGGGAAATAGGAGAACCTTCGTAGGTTTCATAGGTACCTTCACGAGCT---GCAATA 2079 Query 110948 TCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCC 111007 ||||| || || | || | |||||||| || ||||| | ||| | || | Sbjct 2078 TCACAAGAAGCAGAAAGTGCCGCATAGTACATGGTCTCGAAGATCTCACGATTGAGCTGC 2019 Query 111008 TTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGA 111067 | |||| || || ||||| | || | || ||||| |||| || || || || Sbjct 2018 TGCGCTTTCTCCGAGTCAAAAGGATATCTAAGCAGGATAAACGCATCAGCAAGTCCCTGC 1959 Query 111068 ACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAA 111127 || || | || | || | ||||||||||| || | |||| |||||| || |||||| Sbjct 1958 ACTCCAAGTCCCACTGGGCGATGTCGCATATTGGAAGTACGCGTAGTCTCCACTGGATAA 1899 Query 111128 AAATTTCTGTCAATGACTCGGTTTAGATT 111156 |||| ||||| ||||| || | ||| Sbjct 1898 TGATTTTGATCAATCACTCGATTCATATT 1870 >seq4369 Length=2652 Score = 154 bits (170), Expect = 2e-32 Identities = 351/523 (67%), Gaps = 10/523 (2%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || || || || ||||| | |||||| ||||| | ||||||||| | ||| || || Sbjct 2599 CCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACCTGGCATTAAACCACGTTTT 2540 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 |||||||||||||||| ||||| | || |||||||| || |||||||| | || Sbjct 2539 TTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATATCCCCTCCACCGCCATGAAG 2480 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 |||| || || || || || | | || | || | ||| |||| ||||||||| Sbjct 2479 GCAATGAGACGCTCAGCAAATG---TACCCT---CTTCTATCCACTTCAGTGCCCATTTT 2426 Query 122857 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAGAT 122916 || |||||| |||| || | ||| | | | || |||||||| |||||| Sbjct 2425 GCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAATAACTTGGCCTTTTCTACC 2366 Query 122917 CCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTT-CATT 122975 |||| ||||| ||| | |||||||| || || || || |||| | ||| ||| Sbjct 2365 GCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCTCAGCATGTATGTTTTCCATC 2306 Query 122976 ATGGCAT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCGCAAAAT 123034 ||| || ||| || | |||| | || || || | ||| ||||| | | ||||| Sbjct 2305 ATG--ATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTGCACCTCTTTCATAAAAT 2248 Query 123035 TGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGTACT 123094 | | | |||||| || || ||||| | | |||||||| |||| || | | Sbjct 2247 TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAAAGAACGCCAAAATATGCG 2188 Query 123095 TTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGGACAAAT 123154 ||||| | |||||| ||||| || | ||||| || ||| || | |||||||| Sbjct 2187 AAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCCGCAAAGTCATCGGACAAAT 2128 Query 123155 CAACTTCTTCCGCAGTCCAATTGCTCATTTGAGCCTTTTTATA 123197 ||| |||||| ||||||||| | | || ||| |||||||| Sbjct 2127 CAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTATA 2085 >seq7156 Length=1532 Score = 132 bits (146), Expect = 6e-26 Identities = 253/371 (68%), Gaps = 4/371 (1%) Strand=Plus/Minus Query 11446 CTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGT 11505 || ||| |||||||| || || || | | || | ||| || | ||| | || ||||| Sbjct 603 CTGGCGGTCAAAACGGCCTGGACGTAACAATGCTTTATCCAGCACATCTGCACGGTTAGT 544 Query 11506 GGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTG 11565 || ||||| || | | ||||| | ||||| |||||||||||| || | || Sbjct 543 CGCAGCAATCACGATCACGCCAGAATTCGCTTCAAAACCATCCATCTCGACCAGCATCTG 484 Query 11566 ATTAATTGTTTGTTCTCTCTCATCATT--TGCTGGCATACCACCAGCACTGCGTTGCTTG 11623 || | ||| ||||| | |||||| || || | | | |||||||| ||| || | Sbjct 483 GTTCAATGTCTGTTCACGCTCATCGTTACCGCCGCC--AGTACCAGCACCGCGATGACGG 426 Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || ||||| || |||||||| || || || ||||| ||| ||||| |||| ||||| Sbjct 425 CCAACCGCGTCGATCTCATCGATAAATACGATACAAGGTGCATTTTTCTTGGCGTTTTCA 366 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || | || || || | |||||||| || |||||||| || ||||||| | | Sbjct 365 AACATGTCACGCACACGCGCAGCACCCACGCCGACAAACATTTCTACAAAGTCAGAACCG 306 Query 11744 GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803 ||| || ||| || || || | |||||| || || || ||||| || ||||| || Sbjct 305 GAGATGCTGAAGAAGGGCACTTTGGCTTCACCGGCAATCGCACGGGCCAGCAGGGTTTTA 246 Query 11804 CCCGTACCTGG 11814 || ||||| || Sbjct 245 CCAGTACCCGG 235 >seq732 Length=22061 Score = 111 bits (122), Expect = 2e-19 Identities = 328/499 (66%), Gaps = 10/499 (2%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| || ||||| ||||| || | ||| || | ||||| Sbjct 8678 TACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCATC 8737 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 |||||||||| ||||| || | |||| | ||| || | | | || || Sbjct 8738 CAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAGTACAACAGGCGG 8797 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550 |||| ||| |||||||||||| | |||| | | |||||||| || || || | | Sbjct 8798 TCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAACG 8857 Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 122610 || || | |||| | ||| | | ||| ||| || || || | ||| | |||| Sbjct 8858 GGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGAATGATCGTGTGG 8917 Query 122611 ATAGTTTC----GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666 | || || || || | || || | | | ||| |||| |||| || Sbjct 8918 ACGCGGTCCTCGGGCAGCTTGTTCACTA-GCTTGGAGTACATGAGG--CACG-CAAAGTC 8973 Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726 | ||| | ||||||||||| ||| || || || ||||||| || || |||||||| Sbjct 8974 CGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAG 9033 Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 ||| |||||||||| |||| | || | |||||| || || |||||||| || || || || Sbjct 9034 ACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGAC 9093 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTT-TGCATCAAACCATTTCA 122845 | ||||| || | || || || ||| | || || |||| || || |||| || | Sbjct 9094 CGAGGCAAATGCCAGCAGCCGCTCCGCGTACGA-AGATACTTGTGGGTCGCACCACTTGA 9152 Query 122846 TTGCCCATTTCGCCTTCTT 122864 ||||| || || ||||| Sbjct 9153 GCGCCCAATTGGCTTTCTT 9171 >seq12085 Length=2098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||||| |||| ||||||||||||||| | | || |||||| ||| Sbjct 563 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCATATC 622 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 623 CCGGTAGGAGCTT 635 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||||| |||| ||||||||||||||| | | || |||||| ||| Sbjct 718 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCATATC 777 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 778 CCGGTAGGAGCTT 790 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||||| |||| ||| || |||||||| | | || |||||||||| Sbjct 222 GCTCTTATGGTGTAATGGTCAGCACTCTGGGCTCTGAATCCAGCGATCCGGGTTCAAATC 281 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 282 CCGGTAGGAGCTT 294 >seq12082 Length=1675 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 735 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 794 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 795 CCGGTAGGAGCTT 807 >seq6184 Length=1767 Score = 87.8 bits (96), Expect = 2e-12 Identities = 245/368 (67%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 |||||||| || || || || || || || ||||| | ||| | ||| |||| Sbjct 389 CGATCAAATCGCCCTGGACGTAGAAGAGCAGGGTCAAGTACATCAGGTCTATTTGTGGAA 330 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 || || || | || | || || ||||| |||||||| || || || | ||||| Sbjct 329 GCCATTACGATAACGTTTGTATCCACTTCAAATCCATCCATTTCTGTAAGGATCTGATTG 270 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGG-CATACCACCAGCACTGCGTTGCTTGCCCAC 11628 | |||||||| | |||||||| | || | ||| ||||||| || || || || Sbjct 269 AGAGTTTGTTCGCGCTCATCATGTCCTCCACCTACT-CCAGCACCACGCTGACGACCTAC 211 Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGG-GCGATTTCAAAGA 11687 ||||| || ||||| || |||| |||| | || | | ||| || ||| ||||| Sbjct 210 AGCATCTATTTCATCTATAAAGATAATAGAAGGCGCAGTA-CGCTTTGCTTTTTTAAAGA 152 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG- 11746 | || | || | ||||| ||||| ||||||||||||||||| | | ||||| Sbjct 151 GGTCTCTTACTCGAGATGCACCTACACCTACAAACATCTCCACAAACTCAGAACCAGAGA 92 Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 | || | || || |||| | ||| || || | || ||||| || || ||||| || Sbjct 91 TAGTGTA-AAAAGGAACATCAGCTTCTCCTGCTACTGCACGGGCTAGAAGTGTCTTACCA 33 Query 11807 GTACCTGG 11814 || ||||| Sbjct 32 GTTCCTGG 25 >seq692 Length=44129 Score = 82.4 bits (90), Expect = 1e-10 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 11625 CCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 11684 |||| || ||||||||||||||||| ||||| || || || | || || | | Sbjct 37484 CCACTGCGTCAATCTCATCAATGAAAACAATGCACGGAGCGTTCGCACGAGCTTCCTTGA 37425 Query 11685 AGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAG 11744 | || ||||| || | | ||||||||||| |||||||| | ||| | || ||| Sbjct 37424 ACAGGTCGCGCACACGGGATGGGCCCACACCAACGAACATCTCGATAAAATCTGATCCAG 37365 Query 11745 AGCACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11802 | | || | ||| ||||| | | |||||| || ||||| || || || ||||| Sbjct 37364 A--AATGCTAAAGAACGGGACGCTAGCTTCACCGGCAGTGGCTTTCGCCAGCAGCGTCTT 37307 Query 11803 TCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 ||| ||||| ||| || | || ||||| || |||||||||||||| Sbjct 37306 TCCTGTACCAGGCGGGCCTACCAGCAGGGCACCCTTCGGGATCTTGGCACC 37256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627937120065600