Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq75 176 6e-39 seq732 140 4e-28 seq8805 113 6e-20 seq7156 113 6e-20 seq4369 109 7e-19 seq7774 95.1 1e-14 seq7203 91.5 2e-13 >seq75 Length=61118 Score = 176 bits (194), Expect = 6e-39 Identities = 682/1056 (65%), Gaps = 33/1056 (3%) Strand=Plus/Plus Query 118517 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 118576 |||||| ||||||||||||| |||||||| | ||| | ||| || || | ||| || || Sbjct 21173 AATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGTGGCGCATGTTGGA 21232 Query 118577 CTTCCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 118635 | | ||||| ||| || |||| || ||||| || || ||| | || || || | Sbjct 21233 CGTGCGAGCT-TCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGTTCAGGTTACGCG 21291 Query 118636 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTG 118694 | || || | || | || | ||||| | ||||| ||| || || |||||| Sbjct 21292 TCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCG----TCTTCA--- 21344 Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754 ||| |||| || || || | ||||||| ||||||||| | |||||| ||| Sbjct 21345 ACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCGACGTG 21404 Query 118755 TACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 118812 |||| || | ||| ||||||||| || || || ||||| | ||||| || | Sbjct 21405 AACTCCATCACTTCACAGCACAAGTTACTGGACCGG--ATCGTGCCAAGGTTCTGCTGGT 21462 Query 118813 TTGACTTTGTGTTACAC-GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 | || |||| | | ||| |||||||| || ||||| | ||| ||||| || | || Sbjct 21463 TCGA-TTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATCTGC 21521 Query 118872 GACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGG-CGT-----TGGCTCGC 118925 | | | || || ||| | || ||||| || || ||| | || || Sbjct 21522 GCATCCAAGATCGCAAACCACA-----GCTGCTGGG-CATTGATCGTCTTCCTCGCCCGT 21575 Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985 ||||||| ||||||||| || | | |||||||| || ||| | ||| | ||| Sbjct 21576 CCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAGC 21635 Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045 ||||| || | || ||| ||||| | | ||| | |||| | || ||||| |||||| Sbjct 21636 CCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATG 21695 Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105 || || || || | ||| | ||| |||| | ||||| ||| ||||| || Sbjct 21696 AATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCA 21755 Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165 ||||| ||||| || | ||| || | | || |||||||||||||||| ||| | | Sbjct 21756 TGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATC 21815 Query 119166 GCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222 || | || || || || | ||| | || | || || | || ||| | ||||| Sbjct 21816 GCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAAC 21875 Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTA 119282 || |||||||| || || || || | || |||||| || || ||||| || Sbjct 21876 ACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGAATGTAGCTATTC 21935 Query 119283 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCG 119342 |||| | || || ||| || || ||||| || |||||||| || || || ||| Sbjct 21936 GTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGCA 21995 Query 119343 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 119402 || | | | | | ||||| || || || || ||| | || | || | | ||| Sbjct 21996 CATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAAG 22055 Query 119403 CAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATG 119462 || |||| ||| || | || ||||| || || || || || || ||||| ||| | Sbjct 22056 CACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGT- 22114 Query 119463 AACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTG 119521 || | || | || ||||| || || || ||||| | ||| |||||| | || Sbjct 22115 AAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATG 22174 Query 119522 AATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 || || |||| ||| || | || ||| | ||| || Sbjct 22175 GATGCCAATCGCGACTCGTAAAATCATCTGTTGCGG 22210 >seq732 Length=22061 Score = 140 bits (154), Expect = 4e-28 Identities = 530/815 (65%), Gaps = 24/815 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT-GATATTCTCCAT 129786 || || || || ||||||||||| ||||| ||||| || | |||| ||| | ||||| Sbjct 8678 TACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTG-AAGCGAGATCATGTCCAT 8736 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | |||||||||||||||| | |||| | ||| || | | | | || || Sbjct 8737 CCAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAGTACAACAGGCG 8796 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 |||| || |||||||||||| |||| | | |||||||| || || || | | Sbjct 8797 GTCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAAC 8856 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || |||| |||| | ||| | | ||| || ||| || || || | ||| |||| Sbjct 8857 GGGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGAATGAT--CGTG 8914 Query 129967 AATGGTCTCCGTGCCAGGTCTA-TTGCGCAAAGTCTTGAAGAGTTC------CACGGCAA 130019 ||| | | || | || | ||| || |||| |||| | |||| ||| Sbjct 8915 --TGGACGCGGTCCTCGGGCAGCTTGTTCACTAGCTTG--GAGTACATGAGGCACG-CAA 8969 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | ||| ||| | ||||| || || ||||| || |||||||||| || || |||| Sbjct 8970 AGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 9029 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 ||||||| |||||||||| ||| || |||| || || ||||| |||||||| || || | Sbjct 9030 TGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTT 9089 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTT-TGTATCAAACCAC 130198 | || | || || || | || ||||| || | || | |||| || || ||||| Sbjct 9090 CGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGA-AGATACTTGTGGGTCGCACCAC 9148 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCG-ATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 || | |||||| | | |||| | ||| | |||||||| ||||| ||||| | || Sbjct 9149 TTGAGCGCCCAAT-TGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAG 9207 Query 130258 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 130317 | | ||| || | | ||||| |||||| | || ||||| ||||| ||| Sbjct 9208 GTGATCCTTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGA 9267 Query 130318 ATGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTAC 130377 |||| ||||| | | ||| | | || || | || ||||| | || || Sbjct 9268 GTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCAC 9327 Query 130378 CTCATCTGCAAAATTGTTATTG--ATATTCTCAAAAACAATTCCATCGGACCCAGCAAAA 130435 |||| ||| ||| | | || | | |||||| ||||| ||||| | ||||| Sbjct 9328 TTCAT-TGCTAAAGT-TCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAG 9385 Query 130436 AACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCA 130495 || || || | || ||| || || | | ||||| || | ||| || |||||| | Sbjct 9386 AAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTTG 9445 Query 130496 AGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 ||||| | | | |||| |||||| |||||||| Sbjct 9446 AGATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCA 9480 >seq8805 Length=1264 Score = 113 bits (124), Expect = 6e-20 Identities = 201/288 (70%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || |||||||| || || || || | ||| | ||||| |||||| ||||||||| || Sbjct 934 CGGTCAAAGCGGCCGGGACGCAGCAAAGCGGCATCAAGAATATCAGGGCGGTTCGTTGCA 875 Query 14123 GCGATGACAA-CGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATT 14181 || || |||| || || | | || |||||||| ||||| ||| ||| | || || Sbjct 874 GCAATCACAATCGTTGAGTGATT-GTCTTCAAAGCCGTCCATTTCAATCAGCAACTGGTT 816 Query 14182 GATGGTTTGTTCGCGTTCATCAT--TCGCAG-GCATACCACCCGCACTGCGTTGCTTACC 14238 | |||||||||||| ||||||| ||| | ||| ||| |||| || || ||| Sbjct 815 AAGGGTTTGTTCGCGCTCATCATGACCGCCGCCCAT---ACCTGCACCACGCTGACGACC 759 Query 14239 GACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAA 14298 |||||||||||||| ||||| || | | ||| || || || ||| ||||| Sbjct 758 AACGGCGTCAATTTCGTCGATAAAGATCAAACAGGGAGCATGTTTTTTGGCCTGGTCAAA 699 Query 14299 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 | || || |||| ||||| |||||||||||||| || ||||| Sbjct 698 CAAGTCACGGACTCGAGAAGCACCCACACCCACAAACATTTCAACAAA 651 >seq7156 Length=1532 Score = 113 bits (124), Expect = 6e-20 Identities = 273/408 (67%), Gaps = 8/408 (2%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| || ||||| || | | || | || || | ||| ||||| ||||| Sbjct 599 CGGTCAAAACGGCCTGGACGTAACAATGCTTTATCCAGCACATCTGCACGGTTAGTCGCA 540 Query 14123 GCGATGACAACGATGCCCGTCT-CGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATT 14181 || || || | | ||| | | || | ||||| ||||||||||| || | || || Sbjct 539 GCAATCACGATCACGCCAGAATTCGCT-TCAAAACCATCCATCTCGACCAGCATCTGGTT 481 Query 14182 GATGGTTTGTTCGCGTTCATCATT--CGCAGGCA-TACCACCCGCACTGCGTTGCTTACC 14238 | || ||||| || ||||| || ||| | || ||||| |||| ||| || || Sbjct 480 CAATGTCTGTTCACGCTCATCGTTACCGCCGCCAGTACCA---GCACCGCGATGACGGCC 424 Query 14239 GACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAA 14298 || ||||| || |||||||| || |||||||| ||| ||||| ||| |||||| Sbjct 423 AACCGCGTCGATCTCATCGATAAATACGATACAAGGTGCATTTTTCTTGGCGTTTTCAAA 364 Query 14299 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGA 14358 || || ||||| | | ||||| || || |||||||| || ||||| | | |||| Sbjct 363 CATGTCACGCACACGCGCAGCACCCACGCCGACAAACATTTCTACAAAGTCAGAACCGGA 304 Query 14359 ACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 14418 || |||||| || || | |||||| || || || ||||| || ||||| || || Sbjct 303 GATGCTGAAGAAGGGCACTTTGGCTTCACCGGCAATCGCACGGGCCAGCAGGGTTTTACC 244 Query 14419 CGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 || || || ||| | | || | |||||||| || | | |||| Sbjct 243 AGTACCCGGAGGGCCTACCATTAGTACGCCACGTGGAATACGGCCACC 196 >seq4369 Length=2652 Score = 109 bits (120), Expect = 7e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || |||||||| || || | |||||| ||||| || ||||||||| | ||| || || Sbjct 2599 CCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACCTGGCATTAAACCACGTTTT 2540 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 |||||||| |||| | ||| || | || |||||||| ||||||||||| | ||| Sbjct 2539 TTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATATCCCCTCCACCGCCATGAAG 2480 Query 130154 GCAAAGAGACGCTCAGCAAA 130173 |||| ||||||||||||||| Sbjct 2479 GCAATGAGACGCTCAGCAAA 2460 >seq7774 Length=1414 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 117831 TTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATT 117890 |||| || ||||||||||| || || ||||| || | |||||| |||| | |||||| Sbjct 1107 TTTGTCCGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAAATGCATG 1166 Query 117891 GAGGACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCG 117950 |||| || ||||||| | | || |||||||| || || || | || || ||| | Sbjct 1167 GAGGTCAGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGACTGACAG 1226 Query 117951 ATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACA 118010 || ||| || || || || |||||||| |||| | | |||||||||||| || Sbjct 1227 ATAAAGGCGCCACGGTCAGCTGCCATATCGATCAGGGCACGCTGCTTGATTTCCCAGACG 1286 Query 118011 GTCCTGTAGA 118020 || |||||| Sbjct 1287 GTTTTGTAGA 1296 >seq7203 Length=1522 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || |||| | || || ||||| || || | ||||| ||||| ||||| Sbjct 970 GGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAGAGAATGTAAGACC 1029 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| | ||| || || ||||||||||| |||| || |||||||| |||||||| || Sbjct 1030 CGGCATTAAACCACGTTTTTTCAACCAGAATATCGAGCAGAATGAGCCTGAGAAGAAAAT 1089 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || ||| || || || || || || ||| |||| Sbjct 1090 ACCTTCTACAACGGCAAATGCTAACAGGCGGTCAATAAAG 1129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618341769902160