Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq413 178 1e-39 >seq413 Length=60602 Score = 178 bits (196), Expect = 1e-39 Identities = 403/593 (68%), Gaps = 16/593 (3%) Strand=Plus/Plus Query 29876 AGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCC 29935 ||||||||||||| | ||| || || || ||||| || | | || | |||||| || Sbjct 13921 AGCGGTTCCACGTGGTTCAGATACACATGCGCGTCACCAATGACATGAATAAACTCGCCG 13980 Query 29936 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29995 |||| | || | || || |||| | | ||| || || | |||||||||||| || Sbjct 13981 GGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCGTAGCTGGCGATATTG 14040 Query 29996 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 30055 || || || |||||||||||||| | || | |||||| | ||| ||||| | ||| ||| Sbjct 14041 AATGGGACGCCGAGCCCCATGTCAGCTGAGCGCTGGTACATCTGGCACGACAACTCACCG 14100 Query 30056 TC-GCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTC 30114 || ||| |||||||||||||| | ||||||||| || || |||||| | || Sbjct 14101 TCAGCT-ACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCCATGTCATTAAGATC 14159 Query 30115 TTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAG 30171 || |||||||| ||| | ||| || | || ||||| ||| || || | Sbjct 14160 AGCCGGATTCCAGGCCGACAGCACGATACGGCGATCAGAAGGGTTTGTCCGGAGTTTGTG 14219 Query 30172 GTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCG 30230 ||| | || ||||| ||||| || || | ||||| || |||||| | Sbjct 14220 TATCAC----CTCAGCGAGCTGGTCCACGCCTTGGCCTGTATAGTCGGCATGCATGTCGG 14275 Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290 |||||| ||| |||||||| | ||||||||| || || || ||||| |||||||| | | Sbjct 14276 TGTACTTTGCACCGAAATGACGCCACTGGAAACCATATACTGGTCCAAGGTCTCCTACCT 14335 Query 30291 CCCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30349 ||| ||| || ||||| || |||||| | || | || || || |||||||||| Sbjct 14336 CCC-GTGACTGTAAGCCTCTACTGTCCAGGTACTCACGCGATCCATTACCGTCCCAGATA 14394 Query 30350 TTTACCCCCTTCTCAGAGAGC-TCTTTGGAGT-TTGTGGACCCTCTGACGAACCACAGCA 30407 || || || | ||| | | || | | ||| ||||| | | ||||||||||| Sbjct 14395 CGGACACCTTTTTGCTGTAGCGTGTGTGCACTCGTGT-CACCCT-TAATGAACCACAGCA 14452 Query 30408 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30460 ||||||| | || | ||| || || | ||| ||||| || | |||||| Sbjct 14453 GCTCCTCAGCCACACCTCGCCAGAACACGCGCTTCGTCGTCAGCAACGGAAAC 14505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406250551239912