Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq151 100 2e-16
>seq151
Length=51439
Score = 100 bits (110), Expect = 2e-16
Identities = 156/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | ||||| || || || |||||| || ||||| || || || || ||
Sbjct 38283 AGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 38342
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| || || || |||||||| || | ||||| ||||| ||||| | ||||||
Sbjct 38343 CCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCC 38402
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668
||||| |||||| || || | ||| | ||| |||||| |||| ||
Sbjct 38403 TTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTG 38462
Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711
||||| || || || ||||| ||||| ||||||||||| ||||
Sbjct 38463 ATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATCTTGA 38505
Score = 98.7 bits (108), Expect = 6e-16
Identities = 161/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535
|| ||| || | || || | ||||| || || || |||||| || ||||| || ||
Sbjct 38042 GTTGCCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 38101
Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595
|| || || ||||||| || || || |||||||| || | ||||| ||||| ||
Sbjct 38102 ACTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGG 38161
Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTC 34655
||| | ||||||||||| |||||| || || | ||| | ||| |||
Sbjct 38162 CGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTC 38221
Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||| |||| || ||||| || || || ||||| ||||| ||||||||||||
Sbjct 38222 CACGTCCAGCGTAATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATG 38273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314683240920038
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |