Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq9763 89.7 2e-13 seq4651 82.4 3e-11 >seq9763 Length=1149 Score = 89.7 bits (98), Expect = 2e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 14959 TGGTGCGGACGGAGAGACTCGAACTCTCACGCCTTGCGGCGCTGGAACCTAAATCCTGT 15017 ||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 703 TGGTGCGAAAGGAGAGACTCGAACTCTCACGCCTCGCGGCGCTGGAACCTAAATCCAGT 645 >seq4651 Length=2439 Score = 82.4 bits (90), Expect = 3e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 53660 CTGTTCGGGAAATAGACTTCATCGCGGTACACGAACATGACGATGTCGGCGTCTTGCTCA 53719 |||| |||| ||| || || ||||| |||||||||| | ||||| ||||| ||| Sbjct 849 CTGTCCGGGTTGTAGTACTCGTCACGGTATACGAACATGATCAAATCGGCATCTTGTTCA 908 Query 53720 ATGGCGCCGGACTCGCGCAGGTCGCTGAGGACCGGACGCTTGTCGGGGCG 53769 || ||||| || ||||||| ||| || | |||||||||||||| || || Sbjct 909 ATCGCGCCAGATTCGCGCAAGTCACTCATCACCGGACGCTTGTCAGGCCG 958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194791239304892