Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq5177 241 1e-58 seq7821 163 3e-35 seq4015 86.0 6e-12 >seq5177 Length=2144 Score = 241 bits (266), Expect = 1e-58 Identities = 280/378 (74%), Gaps = 0/378 (0%) Strand=Plus/Minus Query 24282 CATGATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 24341 || |||||| ||||| | ||| || ||||| | |||||| ||||||||||||||||| Sbjct 387 CACGATGTCATCAAAAATGATGGAGGGATCATTGACGATGTTGCGGATGATATGGGTGTA 328 Query 24342 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGT 24401 ||||| ||||| || ||||| |||||||| || |||| ||| ||||| | | Sbjct 327 CGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTTTCTATCCAGGTTTCAATCTCAGG 268 Query 24402 GTCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAG 24461 ||||| | ||| |||| | | |||| || | ||||||||| | |||||||| || Sbjct 267 CAATGACACCAGCGGTAGCAAAGCCACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAG 208 Query 24462 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTA 24521 |||||||||| ||||||||||||||||||||||| || || || ||||| | || Sbjct 207 CGTCTGGTACTTAAGGTTGCTGATGAAGATGTGCTTTTCATGCTCGGGCAGGCCCTGATA 148 Query 24522 GTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTT 24581 || |||||| | | ||| | || |||||||||||||||||||| | |||||| || Sbjct 147 ATCAGAACGGTCCTGTGACACATCCACCTCTTCCGGACGCCAGAAGAATGACAGTTGTTT 88 Query 24582 CTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGT 24641 ||||||||| || ||||| | || ||||||||||||||| || | ||||| | Sbjct 87 CTCGATCAGTTTTTCGAATACCGGGTATTTCTGCTGGTCATACCGCGCCACGTTGACGGG 28 Query 24642 CTCGCCGAGGAACATCGG 24659 || || | ||||||||| Sbjct 27 CTGACCAAAGAACATCGG 10 Score = 114 bits (126), Expect = 1e-20 Identities = 245/357 (69%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 23779 CCAACCGCTCGCATACGCTGGTCGGTGATGTAGTCGATGTAACCGTCCAGCATACCTTTG 23838 ||||||| |||||| || ||||||||| || | || | || || ||||| Sbjct 923 CCAACCGAGGCCATACGGCTGTTGGTGATGTATTCAACATACTGGCAGAGGATGTCTTTG 864 Query 23839 TTCAGGCCGATCATCGAACCGTCTTTGAACAGGAAG-CTGCCCCAGTCTTTCTCCTGCAC 23897 |||||||| ||||| || || ||||| |||||| | |||||| | | ||| |||||| | Sbjct 863 TTCAGGCCTATCATGGAGCCATCTTTAAACAGGTATTCTGCCC-ATTGTTTTTCCTGCTC 805 Query 23898 CGATGCGTCGATAAAGCCCTGTCGTGCCTCT-TCGTAGCAAT-CTTCTGCCA-CACGTGC 23954 | ||| | || | | ||| | || | | ||||| | | || | | || || Sbjct 804 GGCGGCGGTTTTGAA--CATCTCGAAACACTCTTGATGCAATTCAGCGGCAATCTCG-GC 748 Query 23955 AAACAGGTCACCTTCGTTACCGTTCTGCATTTCTTTCAGCATATACTGAGTTCCGGACAA 24014 ||| | | || | |||| |||| || ||||| | ||| || |||| || Sbjct 747 GAACTCGGGGTCGTCTTGACCGGAACGCATGATGTTGAGCATGTGCTGGGTGCCGGTCAG 688 Query 24015 ATGCAAGGCTTCATCACGAGCAATCAGTTCAATAATGTTGGTGTTACCCAGCATTACGCC 24074 |||| |||||||||||| |||||||| || || |||| ||| || ||| || Sbjct 687 GTGCAGGGCTTCATCACGCGCAATCAGGCGGATGATCTTGGCGTTGCCTTCCATCACCTT 628 Query 24075 GCGCTCACCGAAAGCGAAGGAGCAGGCGAAGCTCACGTAGAAACGGATCGCTTCCAG 24131 |||||| | || ||||| |||||||||||||| |||||||| |||||||||||||| Sbjct 627 GCGCTCGGCAAAGGCGAATGAGCAGGCGAAGCTGACGTAGAAGCGGATCGCTTCCAG 571 >seq7821 Length=1406 Score = 163 bits (180), Expect = 3e-35 Identities = 492/751 (66%), Gaps = 33/751 (4%) Strand=Plus/Plus Query 25283 GCAGCATACCCGCTCCGGATTTCTTGAAGGAAATCGCATCACGAGGTGGCTCAAAACCGT 25342 |||| ||||| || ||||| ||||| ||| | | | || ||||| |||| ||| | Sbjct 648 GCAGGATACCGTCTTTGGATTGCTTGACGGATACCAGGCCGCGCGGTGGTTCAATACCAT 707 Query 25343 TCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCATCATCGTGGACAGCGTAGAGT 25402 | |||| ||||| ||||| ||||| || || | ||||| | || | ||| || |||| Sbjct 708 TGGTGGCGTTGGCGATCTGGCTGGAGGTTTCTGATGGCATTAACGCAGTCAGGGTGGAGT 767 Query 25403 TACGCAGTCCATGAATAGCGATGTCGATACGCAGCTTTTCCCAATCCATCTTCAGTTTCG 25462 | ||||| |||| | || ||| ||||||| |||||||||||| | || | | Sbjct 768 TGCGCAGGCCATCTTTTTGAATCTCGGTACGCAGGCTTTCCCAATCCAGCAGCAATGGCT 827 Query 25463 CAGTGTGGAGGCCATCTACCTCTTTCTTGTAACGGTCGATCGGCAGAATGCCCTGAGAGT 25522 | || | | |||| | || || || || || |||||||| || || | | || Sbjct 828 CGCTGCAAACGGCATCCAGATCCTTTTTATAGGTATCAATCGGCAGGATACCTTTGGCGT 887 Query 25523 ATGTGGTCTCGTGGAAGAGATCACATTTGCCCAGTTCTTTTGCCAGGTCAACCGACGCTT 25582 | ||||| || ||||| | ||| ||| | || | ||| | ||||| || | Sbjct 888 AAGTGGTTTCCTGGAACGCGCCGCATGGGCCAAACTCACGCGACAGTTGTACCGAAGCCT 947 Query 25583 CCAGCAGGTAATACTGGAATGCTTCAGCCAGTTCGTGAACAGCATTTGCTGCACGAGG-- 25640 |||||||| |||||| |||||| || ||| || || | || | | | Sbjct 948 TGAGCAGGTAGAACTGGATCGCTTCAA--AG---GTGCGGTGCGTTAG--GCCCAACGCT 1000 Query 25641 --ATCGCTG---TACTTCAGGCCACGCTTCGCCAGGTAATATGCTAAGTTGGTCCAGCCA 25695 ||||||| || || ||| |||||||||||||| || ||||| | ||| Sbjct 1001 TCATCGCTGGTGTAGTTAGTGCCGTTTTTCGCCAGGTAATACGCGTAGTTGATTACGCCT 1060 Query 25696 ATACCCAGAGTACGTCGCAGTTTAGTCTT-----CTCTGCC--GCCAGAACCGGATAGTT 25748 | ||||| | ||| || || ||| ||| || || ||||| || | Sbjct 1061 ACGCCCAGTGAACGGCG----TTTGTCGGTGGCACTCAGCGCGGCTTTTACCGGGTAATC 1116 Query 25749 CTGATAATCTAACAGACGATCCAATGCACGAACCAGT-GTACGGACAGGCTCACGCATGT 25807 |||||| || | ||| ||||| |||||| |||| | ||| ||||| | || | Sbjct 1117 CTGATACTCGAGCAGCGCATCCAGTGCACGCACCACCAGGTCGGCCAGGCCTTC-CAGTT 1175 Query 25808 CTTCCAGCTTCTCCACCTTGCCGAGGTTGATGGCAGACAGAGTACACAGGGCCACTTCCC 25867 | ||||| ||||| | || ||||||| ||| || | ||||| || || | ||| | Sbjct 1176 CGTCCAGTGACTCCAGCGCACCCAGGTTGAAGGCGGATAAGGTACAAAGCGCGATTTCGC 1235 Query 25868 CCGGGTCGTTCGGATCATTAATGTCCGTAATCGGATGTGTCGGCAGGGCGATTTCCATGC 25927 || ||| | ||| |||||||| | | | | |||||||| ||||| ||||||| Sbjct 1236 CC---TCGGT---ATCGTTAATGTCATTCAGGGCGTTGGTCGGCAGCGCGATCTCCATGC 1289 Query 25928 ACAGGTTGGACTGTTTCACCGGGGCCTGTTCGGGGTCGAACGGGCTATTAGTGTTGCAGT 25987 |||||||||| || ||| || || | || || |||||||| | |||||||| | Sbjct 1290 ACAGGTTGGATTGACGCACTGGCGCAACAGCTGGATCAAACGGGCTGTGCGTGTTGCAAT 1349 Query 25988 GGTCAACGTGCTGCACGTAAATACGGCCTGT 26018 |||| |||| ||| | ||| |||||||| || Sbjct 1350 GGTCTACGTTCTGGATGTAGATACGGCCAGT 1380 >seq4015 Length=2969 Score = 86.0 bits (94), Expect = 6e-12 Identities = 202/299 (68%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 16724 GCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGG- 16782 ||||| || |||||||| ||||| || ||||| | || ||||| | || || ||||| Sbjct 323 GCGATGGCGTTAATGGTGAAGTCACGTCGGGCGAGGTCTTCTTCTAGCGTGACTTCTGGC 264 Query 16783 GCTGAACATCACCTCGAAATCGTGG-TATCCTGCGCCAGTTGAACGCTCGGTACGGGCCA 16841 || | ||| | | ||| | | || ||| ||| ||| ||||| || || |||| Sbjct 263 GCGG--CATAGACACTAAAGCCTTTATAGCCTTTGCCGGTTTTGCGCTCAGTGCGCGCCA 206 Query 16842 GGGCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAATGCGGCACCGACTTGCT 16901 | || | |||| || || |||||||||||| | || ||||| | ||||| || Sbjct 205 GTGCATGTTCTTGCTGCGTGTCAGGATGCAGGAATACCGGGAAATCCTTGCCGAC-CGCG 147 Query 16902 C-GAAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTCT 16960 | | | || |||| ||||| || | |||| ||||| ||||| || || || ||| Sbjct 146 CGGTAACCTGCCGCCAGCATCTGCTCAGGCGTGGCACCGACGACAACATAATCGCGATCT 87 Query 16961 TTGCTCTCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGACCAGATAGATTTTCAT 17019 ||| | | || | ||| |||| || || || ||||| ||| | |||||| |||| Sbjct 86 TTGACCGGCAGGCCTAGCAGGCCATCACGCACGGCACCGCCTACCTGGTAGATTCTCAT 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478942032899520