Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028785.1 Length=72790 Score E Sequences producing significant alignments: (Bits) Value seq7712 221 6e-53 seq2623 152 2e-32 seq304 98.7 5e-16 seq9695 82.4 4e-11 >seq7712 Length=1425 Score = 221 bits (244), Expect = 6e-53 Identities = 451/663 (68%), Gaps = 23/663 (3%) Strand=Plus/Plus Query 64059 TCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGG 64118 ||||||| ||||| || | ||||| ||| ||||| ||||| || |||| || Sbjct 724 TCATTCCGACCGGTTCGCTGATGTTGGACATCGCACTGGGGATCGGCGGCCTGCCGAAGG 783 Query 64119 GCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACG 64178 |||| || |||||||||||||| || ||||| || || ||| | || || || || | Sbjct 784 GCCGCGTCGTGGAAATCTACGGGCCGGAATCCTCGGGCAAGACCACCTTGACCCTGCAGG 843 Query 64179 CGGTGGC-CAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCC 64237 | | || || ||| ||||| ||||||| ||| || | ||||||||| ||||| | Sbjct 844 CCATTGCGCAGTGC-CAGAAATTGGGTGGCACCGCTGCGTTCATCGACGCCGAGCATGCG 902 Query 64238 CTGGACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTC 64295 || ||||| ||||| ||| ||| || || | ||||| | || || | | Sbjct 903 CTCGACCCGATCTACGCG--GGCAAGCTGGGCGTCAATGTCGACGATCTGCTGCTATCGC 960 Query 64296 AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 64355 |||||||||| || |||||||| ||||| |||| ||| | || || || |||| Sbjct 961 AGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCTC----GAGC 1016 Query 64356 T--GTCCAT--CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 64411 | ||| || ||| || | ||||| ||||| || ||| ||| || || ||||| Sbjct 1017 TCGGTCGATATCGTGGTGATCGACTCGGTGGCTGCACTGACGCCAAAGGCGGAAATCGAA 1076 Query 64412 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 64471 ||||| || || ||| | || ||||| || || || ||| || || ||||| Sbjct 1077 GGCGAGATGGGCGACCAGCTGCCAGGTCTGCAGGCACGTCTGATGAGCCAAGCGCTGCGC 1136 Query 64472 AAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGC 64531 ||||| ||||| | |||| | ||||||| || | ||| |||||||||||||| Sbjct 1137 AAGCTGACCGGTAACATCAAGCGTTCCAACACCTTGGTGGTCTTCATCAACCAGTTGCGC 1196 Query 64532 GAGAAGATCGGCAACGTG------GGCTACGGCCCGAACGAGACCACCACGGGCGGCAAG 64585 | ||||||||| | || || | ||||| | | ||||||| ||||| || Sbjct 1197 CACAAGATCGGCGTCATGATGCCGGGTCAGAGCCCGGAAGTGACCACC---GGCGGTAAC 1253 Query 64586 GCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 64645 || |||| ||||||||||| || || |||| ||||||| |||| | | ||| || Sbjct 1254 GCGTTGAAATTCTACGCCTCGGTGCGTCTGGACATCCGTCGTATCGGCGCGATCAAGAAA 1313 Query 64646 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCG 64705 || || ||| ||||||||| || | | ||||| |||||||||||| |||| || Sbjct 1314 GGTGACGAGATCATCGGCAACCAGACTAAGATCAAGGTGGTCAAGAACAAGTTGGCGCCT 1373 Query 64706 CCG 64708 ||| Sbjct 1374 CCG 1376 >seq2623 Length=5434 Score = 152 bits (168), Expect = 2e-32 Identities = 236/335 (70%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 64295 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 64354 ||||| ||||||||||| ||||| ||||| |||| ||| | || || || || Sbjct 339 CAGCCAGACACTGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTGCGTTCAGGTTCT 280 Query 64355 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 64414 || || || || ||||||||||| || || ||| ||||| || ||| | |||||| Sbjct 279 GTGGATATTGTGGTGGTTGACTCTGTCGCCGCGCTGACTCCGCGTGCAGAGATTGAAGGC 220 Query 64415 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 64474 || || || ||||| || | |||||||| |||||||| |||||||||||| |||| || Sbjct 219 GAAATGGGCGACAGCCATATGGGCCTGCAAGCGCGCCTGATGTCGCAGGCCTTGCGTAAA 160 Query 64475 CTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 64534 || || || | |||| | ||||| || ||| | ||| | |||||| | || | Sbjct 159 CTGACTGGTAACATCAAGCGTACCAATACACTGGTGATCTTCATTAACCAGATCCGTATG 100 Query 64535 AAGATCGGCAACGTGGGCTACGG---CCCGAACGAGACCACCACGGGCGGCAAGGCTTTG 64591 || |||||| | || | ||| |||| || || || || |||||||| || | Sbjct 99 AAAATCGGCGTCATG---TTCGGTAACCCG---GAAACAACGACCGGCGGCAACGCGCTT 46 Query 64592 AGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCG 64626 | ||||||||||| || ||| ||||| |||| || Sbjct 45 AAATTCTACGCCTCTGTGCGCCTGGATATCCGCCG 11 >seq304 Length=36179 Score = 98.7 bits (108), Expect = 5e-16 Identities = 188/273 (69%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 64214 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 64273 |||| || ||||| |||||| | | ||| | | |||||||||||| | ||||| ||| Sbjct 15169 GCCTTTATTGACGCGGAGCACGCGATTGACGCCCACTACGCCAAGGCGTTGGGTGTCGAC 15228 Query 64274 CTCGACAACCTCGTGGTGGTT--CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTG 64331 | | | ||| | || | ||||| ||| |||| || | || |||||||||| || Sbjct 15229 ATTG--ATGCTCTTTATGTCTCGCAGCCCGACTCTGGAGAAGAAGCGCTGGAGATCGCTG 15286 Query 64332 ACCTCCTCGTCAAGTCTGGCGAGCTGTC--CATCGTCGTCGTTGACTCTGTGGCGGCCCT 64389 || || ||| ||| | |||| ||| | | ||||| | ||| ||| || ||||| Sbjct 15287 ACACACTGATCAGGTC--GGGAGCAGTCGACCTTGTCGTGCTAGACAGTGTAGCTGCCCT 15344 Query 64390 GGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCG 64449 ||||| || || ||||| ||||| || || || ||| || | | ||||| || || Sbjct 15345 CGTGCCCCGAGCAGAGCTGGAAGGGGAAATGGGAGACCAGCAAATTGCTCTGCAGGCACG 15404 Query 64450 CCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 64482 ||| ||| || || |||||||||| || || Sbjct 15405 CCTAATGAGTCAAGCTCTGCGCAAGCTGACTGG 15437 >seq9695 Length=1156 Score = 82.4 bits (90), Expect = 4e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 64294 TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTC-TGGCG 64352 |||||||||| |||| |||||||| || ||||| || || || || | || ||| | Sbjct 670 TCAGCCGGACTCTGGAGAGCAGGCACTTGAGATTGTAGAGACGCTGGT-ACGTAGTGGGG 612 Query 64353 AGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAG 64412 || | | || || || ||| ||||||||| || ||||| || |||||||||| Sbjct 611 CAGTGGACTTTGTAGTAGTAGACAGTGTGGCGGCTCTTACTCCGCGAGCAGAGCTCGAAG 552 Query 64413 GCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCA 64472 | || || || ||||||||| | || || || || || || ||| ||||| | || | Sbjct 551 GTGAAATGGGTGACAGTCACATGGGACTTCAGGCTCGACTTATGAGTCAGGCTCTACGAA 492 Query 64473 AGCTCAC 64479 |||| || Sbjct 491 AGCTTAC 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232768908525146