Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_028809.1
Length=58637
Score E
Sequences producing significant alignments: (Bits) Value
seq4113 134 5e-27
seq3401 84.2 8e-12
>seq4113
Length=2865
Score = 134 bits (148), Expect = 5e-27
Identities = 136/177 (77%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 4907 CTGTGGGACGCGGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTCCTGTTCATC 4966
|||||||| | | ||||| ||||||| |||| |||||||| || | | | |||
Sbjct 223 CTGTGGGATGTGATCATGTCTTCCACCTACGACTTTGCCGAGCCAGGGTTTATCCTGATC 164
Query 4967 GACCGCATCAACGAGATGAACAACCTCCACTACTGCGAGACCATCGCGGCGACCAACCCG 5026
|||||| ||||||| ||||||||| | | |||||| | |||| || |||||||||
Sbjct 163 GACCGCGTCAACGAAATGAACAACAACTGGTTCTGCGAAAACATCCGCGCCACCAACCCG 104
Query 5027 TGCGGCGAGCAGCCGCTGCCACCGTTCGGCGCCTGCCTGCTCGGCTCCTTCAACCTG 5083
|| || ||||| || |||||||| | ||||||||||||||| || ||| ||||||||
Sbjct 103 TGTGGTGAGCAACCACTGCCACCTTACGGCGCCTGCCTGCTGGGTTCCGTCAACCTG 47
>seq3401
Length=3744
Score = 84.2 bits (92), Expect = 8e-12
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 3359 CGCGAGGTAGAGCAGCTGGAAGCTCGCCGGGTTCATACTCCGGAGGTCGCGGGTTCGAGT 3418
|||| | |||||||| ||| |||||| |||| ||||| ||||||||||| |||||||||
Sbjct 3397 CGCGGGATAGAGCAGTTGGCAGCTCGTCGGGCTCATAACCCGGAGGTCGCTGGTTCGAGT 3456
Query 3419 CCCGCCCTCGCAACCA 3434
|| || | ||||||||
Sbjct 3457 CCAGCTCCCGCAACCA 3472
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 187489887354468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |