Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028809.1 Length=58637 Score E Sequences producing significant alignments: (Bits) Value seq4113 134 5e-27 seq3401 84.2 8e-12 >seq4113 Length=2865 Score = 134 bits (148), Expect = 5e-27 Identities = 136/177 (77%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 4907 CTGTGGGACGCGGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTCCTGTTCATC 4966 |||||||| | | ||||| ||||||| |||| |||||||| || | | | ||| Sbjct 223 CTGTGGGATGTGATCATGTCTTCCACCTACGACTTTGCCGAGCCAGGGTTTATCCTGATC 164 Query 4967 GACCGCATCAACGAGATGAACAACCTCCACTACTGCGAGACCATCGCGGCGACCAACCCG 5026 |||||| ||||||| ||||||||| | | |||||| | |||| || ||||||||| Sbjct 163 GACCGCGTCAACGAAATGAACAACAACTGGTTCTGCGAAAACATCCGCGCCACCAACCCG 104 Query 5027 TGCGGCGAGCAGCCGCTGCCACCGTTCGGCGCCTGCCTGCTCGGCTCCTTCAACCTG 5083 || || ||||| || |||||||| | ||||||||||||||| || ||| |||||||| Sbjct 103 TGTGGTGAGCAACCACTGCCACCTTACGGCGCCTGCCTGCTGGGTTCCGTCAACCTG 47 >seq3401 Length=3744 Score = 84.2 bits (92), Expect = 8e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 3359 CGCGAGGTAGAGCAGCTGGAAGCTCGCCGGGTTCATACTCCGGAGGTCGCGGGTTCGAGT 3418 |||| | |||||||| ||| |||||| |||| ||||| ||||||||||| ||||||||| Sbjct 3397 CGCGGGATAGAGCAGTTGGCAGCTCGTCGGGCTCATAACCCGGAGGTCGCTGGTTCGAGT 3456 Query 3419 CCCGCCCTCGCAACCA 3434 || || | |||||||| Sbjct 3457 CCAGCTCCCGCAACCA 3472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187489887354468