Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_028820.1
Length=162101
Score E
Sequences producing significant alignments: (Bits) Value
seq4167 96.9 4e-15
seq6661 82.4 8e-11
>seq4167
Length=2817
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/136 (76%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 140479 GCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAACTGGCGA 140538
|| || || || || || |||||||| | ||||| | ||||| || |||||||||||
Sbjct 4 GCGTTGATGCTATCCAGGCTATCGCCACACTCAATCAATACGCAGGAGCTGAACTGGCGT 63
Query 140539 GTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCT--GACGTTTAGATA 140596
|| || ||||| ||||||| ||| || || |||||||| ||||||| ||| | || |
Sbjct 64 GTAGGTGTACGCACACCGGACATGATAGGGGTAGGCAGGGAAATCTTGAACG--TGGAAA 121
Query 140597 CGGCATTATAGAAACG 140612
|||||| ||||||||
Sbjct 122 CGGCATCGTAGAAACG 137
>seq6661
Length=1649
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 67176 TTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTAT 67235
|||||||| || ||||| ||||||||| ||||||||| ||||||| |||||||||||
Sbjct 237 TTTGGTGGGCCCAGCTGGACTTGAACCAGCGACCAATCGGTTATGAGCCGACTGCTCTAA 296
Query 67236 CCATCTGAGCTA 67247
||| ||||||||
Sbjct 297 CCA-CTGAGCTA 307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 518516853230160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |