Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq4167 96.9 4e-15 seq6661 82.4 8e-11 >seq4167 Length=2817 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 140479 GCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAACTGGCGA 140538 || || || || || || |||||||| | ||||| | ||||| || ||||||||||| Sbjct 4 GCGTTGATGCTATCCAGGCTATCGCCACACTCAATCAATACGCAGGAGCTGAACTGGCGT 63 Query 140539 GTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCT--GACGTTTAGATA 140596 || || ||||| ||||||| ||| || || |||||||| ||||||| ||| | || | Sbjct 64 GTAGGTGTACGCACACCGGACATGATAGGGGTAGGCAGGGAAATCTTGAACG--TGGAAA 121 Query 140597 CGGCATTATAGAAACG 140612 |||||| |||||||| Sbjct 122 CGGCATCGTAGAAACG 137 >seq6661 Length=1649 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 67176 TTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTAT 67235 |||||||| || ||||| ||||||||| ||||||||| ||||||| ||||||||||| Sbjct 237 TTTGGTGGGCCCAGCTGGACTTGAACCAGCGACCAATCGGTTATGAGCCGACTGCTCTAA 296 Query 67236 CCATCTGAGCTA 67247 ||| |||||||| Sbjct 297 CCA-CTGAGCTA 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518516853230160