Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq7644 239 1e-58 seq3530 140 1e-28 >seq7644 Length=1437 Score = 239 bits (264), Expect = 1e-58 Identities = 276/368 (75%), Gaps = 8/368 (2%) Strand=Plus/Minus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 |||||||||||| | ||||||||| || |||||||||||||||||||| ||||||||||| Sbjct 385 GAAGTCGATGTCGAAGTCGGGCATCGAGACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 326 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACC 40293 ||| ||||| || || ||||||||||||||| | | ||| || ||| || || Sbjct 325 GAGGCCGTGGCGAAGCGGGTCGAGGTCGGTGATCTTCATGGCGTACGCCGCCATGGAGCC 266 Query 40294 GGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40353 || |||||||||| || || ||||||| | |||||| ||||| |||||| |||||| Sbjct 265 AGCGCCCGAGCCTCGGCCGGGGCCGACCCGGATGCCGTTGTCCTTCGCCCAGTTGATGAA 206 Query 40354 GTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTA 40413 |||||||||||| ||||||||| ||||| |||||||| | ||| || || ||||||| Sbjct 205 GTCGGCGACGACGAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATCCCGGTCTCGTA 146 Query 40414 CTGGAGCTGCTTGCCGTGCTCGTAGTCGG---TCCCGTTCGGGAACCGTCGA-GCTGCCC 40469 || | |||||||| || | | ||||| | ||| ||||| | || || | | || Sbjct 145 CTCGGCCTGCTTGC---GCACCTTGTCGGGGATGCCGCTCGGGTAGCGGTGATGGAGGCC 89 Query 40470 CACGGTGGACCTCGTCCTCGAACCAGGTCACCTCCGTGTGCCCCTCGGGCACCGGGAAGC 40529 | | |||||| | || |||| | | ||||| | || |||||||| ||||| | Sbjct 88 GGC-CTCGACCTCCTTGATGAGCCAGCTGTCTTCCGTCTCGCCGTCGGGCACGGGGAAAC 30 Query 40530 GAGGCATG 40537 | |||||| Sbjct 29 GGGGCATG 22 Score = 131 bits (144), Expect = 5e-26 Identities = 123/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 39184 CGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCAT 39243 ||| ||||| ||||| || || | || ||||| |||||| ||||||||||||||| Sbjct 1378 CGCGCCCTTGCGGAAGATCTCGCGGTGCTCGGCCATCTCCTCGGCCTTCTTCTTGCCCAT 1319 Query 39244 GGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTT 39303 ||| || |||||||||||||| |||||||||||||||| | || | |||||| | || Sbjct 1318 GGCGCGGCGCAGCAGGTCGGCTCCGCCCAGGCTGTAGCCACCCAGCACCTGCGCGGTCTG 1259 Query 39304 CTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTC 39340 | |||||| |||||||||| |||| ||||| ||| Sbjct 1258 CATCACCTGTTCCTGGTAGACCATGATGCCGTAGGTC 1222 >seq3530 Length=3544 Score = 140 bits (154), Expect = 1e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 |||||| || || | |||||||||||| || ||||| ||||| ||||| ||||| || | Sbjct 898 GAAGTCAATATCGAAGTCGGGCATGGATACCCGCTCAGGGTTAAGGAAACGCTCAAACAG 839 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACC 40293 || || | ||||| || ||||| || || || |||| ||| || ||||| ||||| Sbjct 838 CAGATTGTATTTGAGTGGGTCCAGGTCAGTAATGCCCAGGCTGTAAGCCACCAGTGAACC 779 Query 40294 GGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40353 || | ||||| | || || || ||| |||||| || | || |||||| ||| || Sbjct 778 AGCACCGGAGCCCCTGCCCGGGCCTACCGGCACGCCATTATTTTTAGCCCAGTTGATAAA 719 Query 40354 GTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCG 40405 || || |||| |||||| ||| ||||| ||||||||||| || ||| || Sbjct 718 ATCAGCTACGATCAGGAAATAGCCTGGGAACCCCATCTGGATAATGATGCCG 667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160383378272964