Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028832.1 Length=61511 Score E Sequences producing significant alignments: (Bits) Value seq5730 91.5 6e-14 seq7083 84.2 9e-12 >seq5730 Length=1907 Score = 91.5 bits (100), Expect = 6e-14 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 54623 ATGCCCGACGCACATTTCGGCAAAGGCAGCTCGGTCGGCACAGTCATCCCCACCCAAGGC 54682 |||||||||| || | ||||| ||| | || ||| | || ||||| |||| || Sbjct 1488 ATGCCCGACGTGCACCTGGGCAAGGGCGCAACCGTGGGCTCGGTGATCCCGACCCGCGGT 1429 Query 54683 GCCGTCATCCCGGCCGCCGTCGGCGTCGACATCGGCTGCGGCATGATCGCAGCCCGCACC 54742 ||| ||||||||||||| || ||||| || ||||||||||||||| ||| | |||||| Sbjct 1428 GCCATCATCCCGGCCGCGGTTGGCGTGGATATCGGCTGCGGCATGGCCGCGGTGCGCACC 1369 Query 54743 ACC 54745 ||| Sbjct 1368 ACC 1366 >seq7083 Length=1548 Score = 84.2 bits (92), Expect = 9e-12 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 785 ACATATGCGGGTAGCTCAATTCGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTT 844 ||||| || ||||||||||| || ||||||||||||||||||||||| ||||| |||| Sbjct 1276 ACATACGCCAGTAGCTCAATT-GGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTT 1334 Query 845 CGAGTCCTGCCCCGTGTGCCA 865 ||||||| || | |||||| Sbjct 1335 CGAGTCCCTCCTGGCGTGCCA 1355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196685367418236