Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028879.1 Length=43225 Score E Sequences producing significant alignments: (Bits) Value seq4850 93.3 1e-14 seq4016 89.7 1e-13 seq7390 80.6 7e-11 >seq4850 Length=2321 Score = 93.3 bits (102), Expect = 1e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 31254 TGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTTACCG 31313 |||||| | || ||||||||||||| ||||||||| | ||||| |||||||||||||| Sbjct 2167 TGGCTGGGGCGCCAGGATTCGAACCTGGGAATGCCGGTACCAAAAACCGGTGCCTTACCG 2108 Query 31314 CTTGGCGACGGCGCAA 31329 ||||||||||| |||| Sbjct 2107 CTTGGCGACGGGGCAA 2092 >seq4016 Length=2969 Score = 89.7 bits (98), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 31252 TTTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTTA- 31310 |||||||| | || ||||||||||||| || ||||||||||||||||||||||||||| Sbjct 1015 TTTGGCTGAGGAGGAAGGATTCGAACCTTCGCATGCCGGAATCAAAATCCGGTGCCTTAA 956 Query 31311 -CCGCTTGGCGACGGCGCAAAAGCTT 31335 | |||||||||| | ||| | ||| Sbjct 955 CCAGCTTGGCGACTCCCCAATAACTT 930 >seq7390 Length=1483 Score = 80.6 bits (88), Expect = 7e-11 Identities = 62/73 (85%), Gaps = 2/73 (3%) Strand=Plus/Minus Query 31253 TTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTT--A 31310 ||||| | | |||||||||||||||||||||||||| | ||||||| | |||||||| Sbjct 646 TTGGCAGGGGCGGTAGGATTCGAACCTACGAATGCCAGGATCAAAACCTGGTGCCTTGGG 587 Query 31311 CCGCTTGGCGACG 31323 || |||||||||| Sbjct 586 CCTCTTGGCGACG 574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138178565592884