Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq7644 280 5e-71 seq3530 131 5e-26 >seq7644 Length=1437 Score = 280 bits (310), Expect = 5e-71 Identities = 313/416 (75%), Gaps = 4/416 (1%) Strand=Plus/Minus Query 39031 CCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGC--GACGGTCATCGAAGTCGA 39088 |||||||| || | ||||| ||||||| | | ||| ||| | || |||||||| Sbjct 435 CCGTACTTGTCCTTCACGTAGTCGATCACGCGGTCGCGGTTGGACTGGCA--GAAGTCGA 378 Query 39089 TGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 39148 |||| | ||||||||| ||||| ||||| ||||||||||| |||||||||||||| |||| Sbjct 377 TGTCGAAGTCGGGCATCGAGACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGGCCGT 318 Query 39149 GAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAG 39208 | | | ||||| |||||||||||| | ||||||||| |||| |||||||| | | Sbjct 317 GGCGAAGCGGGTCGAGGTCGGTGATCTTCATGGCGTACGCCGCCATGGAGCCAGCGCCCG 258 Query 39209 AGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGA 39268 |||| || || |||||||||| | |||||| |||||||||||| |||||||||||||| Sbjct 257 AGCCTCGGCCGGGGCCGACCCGGATGCCGTTGTCCTTCGCCCAGTTGATGAAGTCGGCGA 198 Query 39269 CGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTACTCGACCT 39328 ||||||||||||| |||||||||||||| ||| || || ||||||||||| ||| Sbjct 197 CGACGAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATCCCGGTCTCGTACTCGGCCT 138 Query 39329 GCGTGCGGTGCTCGTCGTCGTACCCACCGGGGAAGCGGCGGTCCATGCCGATGAGCACCT 39388 || |||| || |||| | || | ||| ||||| | | | |||| |||| Sbjct 137 GCTTGCGCACCTTGTCGGGGATGCCGCTCGGGTAGCGGTGATGGAGGCCGGCCTCGACCT 78 Query 39389 GCTCGCGGAAGAACTGGCCCTCCGTCTGGCCCTCGGGCACCGGGAAGCGGGGCATG 39444 || | || | | | ||||||| ||| |||||||| ||||| ||||||||| Sbjct 77 CCTTGATGAGCCAGCTGTCTTCCGTCTCGCCGTCGGGCACGGGGAAACGGGGCATG 22 Score = 120 bits (132), Expect = 1e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 38091 CGCCCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCAT 38150 ||| ||||| ||||| || || | || ||||| | |||||| ||||||||||||||| Sbjct 1378 CGCGCCCTTGCGGAAGATCTCGCGGTGCTCGGCCATCTCCTCGGCCTTCTTCTTGCCCAT 1319 Query 38151 GGCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTT 38210 |||||| || || |||||||| || ||| |||| || |||| | |||||| | || Sbjct 1318 GGCGCGGCGCAGCAGGTCGGCTCCGCCCAGGCTGTAGCCACCCAGCACCTGCGCGGTCTG 1259 Query 38211 CTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCG 38269 | |||||| |||||||||| |||| ||| ||||| ||| |||||||||| || Sbjct 1258 CATCACCTGTTCCTGGTAGACCATGATGCCGTAGGTCTCTGACAGCATCTCGGCCACCG 1200 >seq3530 Length=3544 Score = 131 bits (144), Expect = 5e-26 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 |||||| || || | |||||||||||| || ||||||||||| ||||| ||||| || | Sbjct 898 GAAGTCAATATCGAAGTCGGGCATGGATACCCGCTCAGGGTTAAGGAAACGCTCAAACAG 839 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 || || || ||||||||||| || || || ||| ||| || |||| || || Sbjct 838 CAGATTGTATTTGAGTGGGTCCAGGTCAGTAATGCCCAGGCTGTAAGCCACCAGTGAACC 779 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 ||| | ||||| | || ||||| ||| |||||| || | || |||||| ||| || Sbjct 778 AGCACCGGAGCCCCTGCCCGGGCCTACCGGCACGCCATTATTTTTAGCCCAGTTGATAAA 719 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCG 39312 || || |||| ||||| || ||||||||||||||| | || ||| || Sbjct 718 ATCAGCTACGATCAGGAAATAGCCTGGGAACCCCATCTGGATAATGATGCCG 667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159692277474852