Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_028892.1
Length=49949
Score E
Sequences producing significant alignments: (Bits) Value
seq7644 280 5e-71
seq3530 131 5e-26
>seq7644
Length=1437
Score = 280 bits (310), Expect = 5e-71
Identities = 313/416 (75%), Gaps = 4/416 (1%)
Strand=Plus/Minus
Query 39031 CCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGC--GACGGTCATCGAAGTCGA 39088
|||||||| || | ||||| ||||||| | | ||| ||| | || ||||||||
Sbjct 435 CCGTACTTGTCCTTCACGTAGTCGATCACGCGGTCGCGGTTGGACTGGCA--GAAGTCGA 378
Query 39089 TGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 39148
|||| | ||||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||
Sbjct 377 TGTCGAAGTCGGGCATCGAGACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGGCCGT 318
Query 39149 GAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAG 39208
| | | ||||| |||||||||||| | ||||||||| |||| |||||||| | |
Sbjct 317 GGCGAAGCGGGTCGAGGTCGGTGATCTTCATGGCGTACGCCGCCATGGAGCCAGCGCCCG 258
Query 39209 AGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGA 39268
|||| || || |||||||||| | |||||| |||||||||||| ||||||||||||||
Sbjct 257 AGCCTCGGCCGGGGCCGACCCGGATGCCGTTGTCCTTCGCCCAGTTGATGAAGTCGGCGA 198
Query 39269 CGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTACTCGACCT 39328
||||||||||||| |||||||||||||| ||| || || ||||||||||| |||
Sbjct 197 CGACGAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATCCCGGTCTCGTACTCGGCCT 138
Query 39329 GCGTGCGGTGCTCGTCGTCGTACCCACCGGGGAAGCGGCGGTCCATGCCGATGAGCACCT 39388
|| |||| || |||| | || | ||| ||||| | | | |||| ||||
Sbjct 137 GCTTGCGCACCTTGTCGGGGATGCCGCTCGGGTAGCGGTGATGGAGGCCGGCCTCGACCT 78
Query 39389 GCTCGCGGAAGAACTGGCCCTCCGTCTGGCCCTCGGGCACCGGGAAGCGGGGCATG 39444
|| | || | | | ||||||| ||| |||||||| ||||| |||||||||
Sbjct 77 CCTTGATGAGCCAGCTGTCTTCCGTCTCGCCGTCGGGCACGGGGAAACGGGGCATG 22
Score = 120 bits (132), Expect = 1e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 38091 CGCCCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCAT 38150
||| ||||| ||||| || || | || ||||| | |||||| |||||||||||||||
Sbjct 1378 CGCGCCCTTGCGGAAGATCTCGCGGTGCTCGGCCATCTCCTCGGCCTTCTTCTTGCCCAT 1319
Query 38151 GGCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTT 38210
|||||| || || |||||||| || ||| |||| || |||| | |||||| | ||
Sbjct 1318 GGCGCGGCGCAGCAGGTCGGCTCCGCCCAGGCTGTAGCCACCCAGCACCTGCGCGGTCTG 1259
Query 38211 CTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCG 38269
| |||||| |||||||||| |||| ||| ||||| ||| |||||||||| ||
Sbjct 1258 CATCACCTGTTCCTGGTAGACCATGATGCCGTAGGTCTCTGACAGCATCTCGGCCACCG 1200
>seq3530
Length=3544
Score = 131 bits (144), Expect = 5e-26
Identities = 168/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140
|||||| || || | |||||||||||| || ||||||||||| ||||| ||||| || |
Sbjct 898 GAAGTCAATATCGAAGTCGGGCATGGATACCCGCTCAGGGTTAAGGAAACGCTCAAACAG 839
Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200
|| || || ||||||||||| || || || ||| ||| || |||| || ||
Sbjct 838 CAGATTGTATTTGAGTGGGTCCAGGTCAGTAATGCCCAGGCTGTAAGCCACCAGTGAACC 779
Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260
||| | ||||| | || ||||| ||| |||||| || | || |||||| ||| ||
Sbjct 778 AGCACCGGAGCCCCTGCCCGGGCCTACCGGCACGCCATTATTTTTAGCCCAGTTGATAAA 719
Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCG 39312
|| || |||| ||||| || ||||||||||||||| | || ||| ||
Sbjct 718 ATCAGCTACGATCAGGAAATAGCCTGGGAACCCCATCTGGATAATGATGCCG 667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 159692277474852
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |