Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq6992 131 4e-26 seq6336 104 5e-18 >seq6992 Length=1569 Score = 131 bits (144), Expect = 4e-26 Identities = 227/322 (70%), Gaps = 11/322 (3%) Strand=Plus/Plus Query 5819 CGCCT-CAGCCATCGTGTCGGCCAGCACCTGCGCGGTGCGGGTGTAGTTTTCAAAGAGGA 5877 ||||| | || || ||||||||||| | |||||||||||| ||| | || ||| || Sbjct 1239 CGCCTTCGGCGATGGTGTCGGCCAGGATCTGCGCGGTGCGCGTGGCCGTCTCGAAGGCGA 1298 Query 5878 ACAGCGGGTCATCAGAGCAGGTACGGTTACCCCAGAATCGGAAACCGTCG--CGGCGAAT 5935 ||| ||| || | ||| || || |||||||| || |||| | || | | Sbjct 1299 ACATGTTGTCCTCCGCGCACGTGCGCGATCCCCAGAAGCGCTGGCCGTTGAACGTC--AC 1356 Query 5936 CAGCGTAGTGACGCCTGACTCGTTAAGCAGGTCAGCATCGGTG-CCGGACTCCTGCAAAT 5994 |||||| |||| | | |||||| || | | | ||||||||| ||||| ||||||| || Sbjct 1357 CAGCGTGGTGATGTCGCCCTCGTTGAGGATGCCGGCATCGGTGGCCGGA-TCCTGCAGAT 1415 Query 5995 CCCAGAATACAGATGC--GCTGATGCCGGTAACACCGTTTACCCCGACGTTGGACAGCGT 6052 |||| || || || | | ||||||||| || || || ||||||||||| | Sbjct 1416 CCCA--ATGCACATCCTTGGAGATGCCGGTGACGCCAGCCACGGGCACGTTGGACAGGCT 1473 Query 6053 TTTATGCCAGCCCTGCTCCTGGTCGATTTTAGCGCGCAGACCCAGCGCACGGGCGGTGGC 6112 || ||||||||||| || |||||| || || ||||| || |||||||| || ||||| Sbjct 1474 CTTGTGCCAGCCCTGTTCGGTGTCGATCTTGGCACGCAGGCCGAGCGCACGCGCAGTGGC 1533 Query 6113 ATACGCGGTGGCGGTGGTACTG 6134 ||| || | | ||||| ||| Sbjct 1534 ATATGCCGCCGTCGTGGTGCTG 1555 >seq6336 Length=1727 Score = 104 bits (114), Expect = 5e-18 Identities = 163/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 18790 GTGCCGAGGCTTGCCGGGTCATCGGTGACGGCCAGCCCCACCAGATAACATTTGCCGGTG 18849 ||||| ||||| ||||| |||||||| ||||| || || ||||| ||||||||| Sbjct 210 GTGCCCAGGCTGGCCGGCGAGTCGGTGACCGCCAGGCCGACGAGATACGCCTTGCCGGTG 269 Query 18850 TTGGCAAAGTTCGGCTGAATTTCCATTGAGGTATAGACCTTCTGCGCGGCCTTGTTCATC 18909 ||||| || ||| ||| | || || ||| |||| ||||||| || |||||| || Sbjct 270 TTGGCGAATTTCTCCTGCACCTCGATGCTGGTGTAGAGCTTCTGCTTGGACTTGTTGATG 329 Query 18910 GCGATAAGGTCATCGGTCGGGGTGATTTTCGCAAACAGCGCCCATTTGCCTTTCAGCGCC 18969 | ||| ||||| ||||||| ||| | |||||||||||| || || | ||| Sbjct 330 GTGATCAGGTCGGCGGTCGGCTCGATCTGGGCAAACAGCGCCAG---GCGCTTG-GTGCC 385 Query 18970 GAATC-ATCGTCAATCTTTTCGGCCTTCAGTTCGGCCACATCGCCATA 19016 ||| ||| || | || |||||| |||| | | | ||||||||||| Sbjct 386 --ATCGATC-TCGACCTCTTCGGCTTTCACTGCAGTGACATCGCCATA 430 Score = 80.6 bits (88), Expect = 6e-11 Identities = 107/147 (73%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 19576 GCTCATCATCAAACCGCAGAAAACCGGCGGTGACTTCAAGGAAATTGACCTGCTGGGACG 19635 ||| || || || ||| | || ||||||| || |||||||||||||| |||||| || Sbjct 968 GCTGATTATGAAGCCGGAAAAGTCCGGCGGCGATTTCAAGGAAATTGATCTGCTGCATCG 1027 Query 19636 TCAGATTGAACGACTGGCACGGGTCAACCGCTAC--AGTCAGACCGGCAACGAGGCAGAC 19693 ||| | || || | ||| || || | |||||| || | | ||||||||| || || Sbjct 1028 GCAGTTGGAGCGCCAGGCGCGCATCCAGCGCTACCAAGGCGG--CGGCAACGAAGCCGAT 1085 Query 19694 CTTAATCCGAACGTCGCTAACCGCAAC 19720 || |||||| ||||| || |||||| Sbjct 1086 CTGAATCCGGCTGTCGCCAATCGCAAC 1112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104423410870284