Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028897.1 Length=49421 Score E Sequences producing significant alignments: (Bits) Value seq7083 89.7 2e-13 seq1072 82.4 2e-11 >seq7083 Length=1548 Score = 89.7 bits (98), Expect = 2e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 4136 GCCAGTAGCTCAACTGGTAGAGCAGCGGTCTCCAAAGCCGCGCGTTGGAGGTTCGAGTCC 4195 ||||||||||||| ||| |||||||||||||||||| |||| ||||| ||||||||||| Sbjct 1282 GCCAGTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCC 1341 Query 4196 TCCCTGGCCTGC 4207 |||||| ||| Sbjct 1342 CTCCTGGCGTGC 1353 >seq1072 Length=16059 Score = 82.4 bits (90), Expect = 2e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 4135 GGCCAGTAGCTCAACTGGTAGAGCAGCGGTCTCCAAAGCCGCGCGTTGGAGGTTCGAGTC 4194 ||||| |||||||| |||||||| | ||||||||||| ||| | ||||| |||||||| | Sbjct 111 GGCCAATAGCTCAATTGGTAGAGTATCGGTCTCCAAAACCGAGGGTTGGGGGTTCGAGAC 170 Query 4195 CTCCCTGGCCTGCATACCACCCAGT 4219 | | |||||||| | ||||| || Sbjct 171 CCTCTTGGCCTGCCAAACACCCGGT 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158002919968356