Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_028898.1
Length=35764
Score E
Sequences producing significant alignments: (Bits) Value
seq6177 161 2e-35
>seq6177
Length=1770
Score = 161 bits (178), Expect = 2e-35
Identities = 528/813 (65%), Gaps = 12/813 (1%)
Strand=Plus/Plus
Query 24497 ATCAAGTAAGGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATG 24556
||||| || ||| ||| |||||| | ||| |||| ||| || ||| |||| ||
Sbjct 352 ATCAATAAAAGTTTGCATAGGTGTTTTTCCATAGCAATATTTACCAGTATGAGTTCTTTG 411
Query 24557 GTGATTATAATACATTAACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATCCGTATA 24616
|||||||| ||| ||| ||||||||| ||||||| | | || |||
Sbjct 412 CGTATTATAATGATTTAGCCAGGAATCTAAATCTTTTTGTAATTCTGATGAAGAATGATA 471
Query 24617 AATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTC 24676
| ||| || | ||| || || ||||| || | | || || || || || ||
Sbjct 472 CAGTTTTTTACGAAAGGCTACAGCATAAAACTCATCTTGAATGGTACGGTGAAAACGCTC 531
Query 24677 GCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTTAT 24736
||| || || || ||||| ||| ||| |||| || ||| | || |||||||| | ||
Sbjct 532 GCAAATACCATTTGTCTGAGGACTTTTGGCCTTAGTCTTAGTATGGTCAATATCTTCTAA 591
Query 24737 TGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTC 24796
||||| || | | ||| || || | ||| || |||||||| || |||| | |||
Sbjct 592 GGCTAAGTACAATTGATATTCATGTTGCTCTCTGTTACCACAATACTCTGTTCCCCTGTC 651
Query 24797 AGTTAATATGCGTAACATCGGTAAACC--TTGGCTTTCAAAGTATGGTAACACTTTATCA 24854
|||||| | | ||| | | | | || ||| ||| | || | |||||||||
Sbjct 652 AGTTAAAACCCTTAAAAGACGAATGTCATTTTGCTCATAAA--AAGGGATGACTTTATCA 709
Query 24855 TTCAGCATATCCGCAG-CACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCAC 24913
|| |||||||| || | ||| | ||| | || ||| ||||| |||| || ||
Sbjct 710 TTGAGCATATCAGCTGATACT-AAAGCATTTTTACGATCATAGAGTTTAACAAAGGCTAC 768
Query 24914 TTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCC 24973
|| | ||||| |||||||| |||||||| |||||| |||| || ||||||| || ||
Sbjct 769 CTTTGTATAAGTGTCAATAAAAGTTTGTTGGTAAATATGACCTACCCCTTTGATATTACC 828
Query 24974 CACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCACA 25033
|||||| | || ||||||| ||| | |||||| || || ||| || ||||| ||
Sbjct 829 CACATAATAGGTGTCTTGTGCGCCTAAATAGCCTGGATGATGCGTCTCTATTTCTCCTTG 888
Query 25034 GGC---AATCTCATCTTCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTAT 25090
|| ||||| ||| | || | ||||| || || |||| || | || ||
Sbjct 889 TGCCTGTTTCTCAGCTT-TGGCT--CTTTCTAAAGCCGTTATCTGTTCATCTGTAAGAAT 945
Query 25091 AATACCTTGTTCTGCAACCAGTTTTTCCAGGGCGATTAATCTTTGCTTAAAATTGGCAAG 25150
|| |||| | ||| ||| | || |||| | | || |||| | || |
Sbjct 946 TATTCCTTCCTGATTGACCTTAGCTTCTAATGCTTTTAAACGCTTCTGAAAAGTTGCTAA 1005
Query 25151 ATGATGACGTAACCAAATCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACG 25210
|| ||| | | |||||| || ||||| || || | |||||||| || || |||||
Sbjct 1006 ATCATGCCTCAGCCAAATAGAGCGTACTCCCCCGGGTGAAACAATTATACCCTGTTTCTT 1065
Query 25211 GAGTTCGTTACTCACTCTTACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAAC 25270
||||| || ||||| | || ||| |||| || || | || | || |||||
Sbjct 1066 TAGTTCATTTGATACTCTGAGTTGGCCATATGCAGGTAAGTCTACGGCCATTTTAACAAC 1125
Query 25271 AGCTTGCTCTATTGCCTCATCAACACGATTTTT 25303
|||| |||| | |||| || ||||||||
Sbjct 1126 TGCTTCTTCTACTAAAACATCTACTCGATTTTT 1158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 114306792191432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |