Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq6177 161 2e-35 >seq6177 Length=1770 Score = 161 bits (178), Expect = 2e-35 Identities = 528/813 (65%), Gaps = 12/813 (1%) Strand=Plus/Plus Query 24497 ATCAAGTAAGGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATG 24556 ||||| || ||| ||| |||||| | ||| |||| ||| || ||| |||| || Sbjct 352 ATCAATAAAAGTTTGCATAGGTGTTTTTCCATAGCAATATTTACCAGTATGAGTTCTTTG 411 Query 24557 GTGATTATAATACATTAACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATCCGTATA 24616 |||||||| ||| ||| ||||||||| ||||||| | | || ||| Sbjct 412 CGTATTATAATGATTTAGCCAGGAATCTAAATCTTTTTGTAATTCTGATGAAGAATGATA 471 Query 24617 AATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTC 24676 | ||| || | ||| || || ||||| || | | || || || || || || Sbjct 472 CAGTTTTTTACGAAAGGCTACAGCATAAAACTCATCTTGAATGGTACGGTGAAAACGCTC 531 Query 24677 GCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTTAT 24736 ||| || || || ||||| ||| ||| |||| || ||| | || |||||||| | || Sbjct 532 GCAAATACCATTTGTCTGAGGACTTTTGGCCTTAGTCTTAGTATGGTCAATATCTTCTAA 591 Query 24737 TGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTC 24796 ||||| || | | ||| || || | ||| || |||||||| || |||| | ||| Sbjct 592 GGCTAAGTACAATTGATATTCATGTTGCTCTCTGTTACCACAATACTCTGTTCCCCTGTC 651 Query 24797 AGTTAATATGCGTAACATCGGTAAACC--TTGGCTTTCAAAGTATGGTAACACTTTATCA 24854 |||||| | | ||| | | | | || ||| ||| | || | ||||||||| Sbjct 652 AGTTAAAACCCTTAAAAGACGAATGTCATTTTGCTCATAAA--AAGGGATGACTTTATCA 709 Query 24855 TTCAGCATATCCGCAG-CACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCAC 24913 || |||||||| || | ||| | ||| | || ||| ||||| |||| || || Sbjct 710 TTGAGCATATCAGCTGATACT-AAAGCATTTTTACGATCATAGAGTTTAACAAAGGCTAC 768 Query 24914 TTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCC 24973 || | ||||| |||||||| |||||||| |||||| |||| || ||||||| || || Sbjct 769 CTTTGTATAAGTGTCAATAAAAGTTTGTTGGTAAATATGACCTACCCCTTTGATATTACC 828 Query 24974 CACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCACA 25033 |||||| | || ||||||| ||| | |||||| || || ||| || ||||| || Sbjct 829 CACATAATAGGTGTCTTGTGCGCCTAAATAGCCTGGATGATGCGTCTCTATTTCTCCTTG 888 Query 25034 GGC---AATCTCATCTTCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTAT 25090 || ||||| ||| | || | ||||| || || |||| || | || || Sbjct 889 TGCCTGTTTCTCAGCTT-TGGCT--CTTTCTAAAGCCGTTATCTGTTCATCTGTAAGAAT 945 Query 25091 AATACCTTGTTCTGCAACCAGTTTTTCCAGGGCGATTAATCTTTGCTTAAAATTGGCAAG 25150 || |||| | ||| ||| | || |||| | | || |||| | || | Sbjct 946 TATTCCTTCCTGATTGACCTTAGCTTCTAATGCTTTTAAACGCTTCTGAAAAGTTGCTAA 1005 Query 25151 ATGATGACGTAACCAAATCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACG 25210 || ||| | | |||||| || ||||| || || | |||||||| || || ||||| Sbjct 1006 ATCATGCCTCAGCCAAATAGAGCGTACTCCCCCGGGTGAAACAATTATACCCTGTTTCTT 1065 Query 25211 GAGTTCGTTACTCACTCTTACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAAC 25270 ||||| || ||||| | || ||| |||| || || | || | || ||||| Sbjct 1066 TAGTTCATTTGATACTCTGAGTTGGCCATATGCAGGTAAGTCTACGGCCATTTTAACAAC 1125 Query 25271 AGCTTGCTCTATTGCCTCATCAACACGATTTTT 25303 |||| |||| | |||| || |||||||| Sbjct 1126 TGCTTCTTCTACTAAAACATCTACTCGATTTTT 1158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114306792191432