Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028899.1 Length=222888 Score E Sequences producing significant alignments: (Bits) Value seq2656 93.3 6e-14 >seq2656 Length=5339 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 102573 TCTGGAACCACATCGCCTGCACGTCGGACAACGACCTTATCGCCGATTCGCAGATCTTTA 102632 || |||| |||||| ||||| || | ||| | ||| |||||||||| | | |||||| Sbjct 4435 TCAGGAATCACATCCCCTGCCCGCCTGACGATGACTGTATCGCCGATATGGATATCTTTG 4376 Query 102633 CGCCGGATCTCGTCTTCGTTATGCAGTGTTGCGTTGGAAACCCACACACCGCCTACGAAA 102692 || || | ||| || ||||||||||| || ||||| | || ||| || || || || Sbjct 4375 CGGCGTAACTCATCCTCGTTATGCAGCGTGGCGTTAGTCACAGTCACTCCTCCGACAAAC 4316 Query 102693 ACGGGCTCTAAGCGGCCCACTGGAGTAATGGCCCCCGTTCTACCTACTTGAACATCGATC 102752 || || | | | | | || || |||||||| || || | || ||||| ||| ||| Sbjct 4315 ACCGGTTTCAGCCTGGCAACCGGCGTAATGGCGCCTGTGCGGCCCACTTGCACAGTGATA 4256 Query 102753 GCCTCCAGCGTCGTTACAGCCTCTTCTGCGGGGAACTTCCATGCGA 102798 | |||| | ||| | || ||||| || | ||||| ||||| Sbjct 4255 TCTTCCACCAGCGTCTCGGCTTCTTCAGCTGCAAACTTGTGTGCGA 4210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713005866362880