Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq7712 215 2e-51 seq2623 131 8e-26 seq304 95.1 6e-15 >seq7712 Length=1425 Score = 215 bits (238), Expect = 2e-51 Identities = 450/663 (68%), Gaps = 23/663 (3%) Strand=Plus/Plus Query 66465 TCATTCCCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGG 66524 ||||||| ||||| || | ||||| ||| ||||| ||||| || |||| || Sbjct 724 TCATTCCGACCGGTTCGCTGATGTTGGACATCGCACTGGGGATCGGCGGCCTGCCGAAGG 783 Query 66525 GCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACG 66584 |||| || |||||||||||||| || ||||| || || ||| | || || || || | Sbjct 784 GCCGCGTCGTGGAAATCTACGGGCCGGAATCCTCGGGCAAGACCACCTTGACCCTGCAGG 843 Query 66585 CGGTGGC-CAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCC 66643 | | || || ||| ||||| ||||||| ||| || | ||||||||| ||||| | Sbjct 844 CCATTGCGCAGTGC-CAGAAATTGGGTGGCACCGCTGCGTTCATCGACGCCGAGCATGCG 902 Query 66644 CTGGACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTC 66701 || ||||| ||||| ||| ||| || || | ||||| | || || | | Sbjct 903 CTCGACCCGATCTACGCG--GGCAAGCTGGGCGTCAATGTCGACGATCTGCTGCTATCGC 960 Query 66702 AGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 66761 |||| || ||||| |||||||| ||||| |||| ||| | || || || |||| Sbjct 961 AGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCTC----GAGC 1016 Query 66762 T--GTCCAT--CGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 66817 | ||| || ||| || | ||||| ||||| || ||| ||| || || ||||| Sbjct 1017 TCGGTCGATATCGTGGTGATCGACTCGGTGGCTGCACTGACGCCAAAGGCGGAAATCGAA 1076 Query 66818 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGC 66877 ||||| || || ||| | || ||||| || || || ||| || || ||||| Sbjct 1077 GGCGAGATGGGCGACCAGCTGCCAGGTCTGCAGGCACGTCTGATGAGCCAAGCGCTGCGC 1136 Query 66878 AAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGC 66937 ||||| || || | |||| | ||||||| || | ||| |||||||||||||| Sbjct 1137 AAGCTGACCGGTAACATCAAGCGTTCCAACACCTTGGTGGTCTTCATCAACCAGTTGCGC 1196 Query 66938 GAGAAGATCGGCAACGTG------GGCTACGGCCCGAATGAGACCACCACGGGCGGAAAG 66991 | ||||||||| | || || | ||||| | | ||||||| ||||| || Sbjct 1197 CACAAGATCGGCGTCATGATGCCGGGTCAGAGCCCGGAAGTGACCACC---GGCGGTAAC 1253 Query 66992 GCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 67051 || |||| ||||||||||| || ||| |||| ||||||| |||| | | ||| || Sbjct 1254 GCGTTGAAATTCTACGCCTCGGTGCGTCTGGACATCCGTCGTATCGGCGCGATCAAGAAA 1313 Query 67052 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCG 67111 || || ||| ||||||||| || | | ||||| |||||||||||| |||| || Sbjct 1314 GGTGACGAGATCATCGGCAACCAGACTAAGATCAAGGTGGTCAAGAACAAGTTGGCGCCT 1373 Query 67112 CCG 67114 ||| Sbjct 1374 CCG 1376 >seq2623 Length=5434 Score = 131 bits (144), Expect = 8e-26 Identities = 231/335 (69%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 66701 CAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66760 ||||| || || ||||| ||||| ||||| |||| ||| | || || || || Sbjct 339 CAGCCAGACACTGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTGCGTTCAGGTTCT 280 Query 66761 CTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 66820 || || || || |||||||| || || || ||| ||||| || ||| | |||||| Sbjct 279 GTGGATATTGTGGTGGTTGACTCTGTCGCCGCGCTGACTCCGCGTGCAGAGATTGAAGGC 220 Query 66821 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAG 66880 || || || ||||| || | |||||||| |||||||| ||||| |||||| |||| || Sbjct 219 GAAATGGGCGACAGCCATATGGGCCTGCAAGCGCGCCTGATGTCGCAGGCCTTGCGTAAA 160 Query 66881 CTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 66940 || ||||| | |||| | ||||| || ||| | ||| | |||||| | || | Sbjct 159 CTGACTGGTAACATCAAGCGTACCAATACACTGGTGATCTTCATTAACCAGATCCGTATG 100 Query 66941 AAGATCGGCAACGTGGGCTACGG---CCCGAATGAGACCACCACGGGCGGAAAGGCTTTG 66997 || |||||| | || | ||| |||| || || || || ||||| || || | Sbjct 99 AAAATCGGCGTCATG---TTCGGTAACCCG---GAAACAACGACCGGCGGCAACGCGCTT 46 Query 66998 AGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCG 67032 | ||||||||||| || || ||||| |||| || Sbjct 45 AAATTCTACGCCTCTGTGCGCCTGGATATCCGCCG 11 >seq304 Length=36179 Score = 95.1 bits (104), Expect = 6e-15 Identities = 187/273 (68%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 66620 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66679 |||| || ||||| |||||| | | ||| | | |||||||||||| | ||||| ||| Sbjct 15169 GCCTTTATTGACGCGGAGCACGCGATTGACGCCCACTACGCCAAGGCGTTGGGTGTCGAC 15228 Query 66680 CTCGACAACCTCGTGGTGGTT--CAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTG 66737 | | | ||| | || | |||||||| | || || | || |||||||||| || Sbjct 15229 ATTG--ATGCTCTTTATGTCTCGCAGCCCGACTCTGGAGAAGAAGCGCTGGAGATCGCTG 15286 Query 66738 ACCTCCTCGTCAAGTCTGGCGAGCTGTC--CATCGTCGTCGTTGACTCCGTGGCGGCCCT 66795 || || ||| ||| | |||| ||| | | ||||| | ||| || || ||||| Sbjct 15287 ACACACTGATCAGGTC--GGGAGCAGTCGACCTTGTCGTGCTAGACAGTGTAGCTGCCCT 15344 Query 66796 GGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCG 66855 ||||| || || ||||| ||||| || || || ||| || | | ||||| || || Sbjct 15345 CGTGCCCCGAGCAGAGCTGGAAGGGGAAATGGGAGACCAGCAAATTGCTCTGCAGGCACG 15404 Query 66856 CCTCATGTCACAGGCCATGCGCAAGCTCACTGG 66888 ||| ||| || || |||||||||| ||||| Sbjct 15405 CCTAATGAGTCAAGCTCTGCGCAAGCTGACTGG 15437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242825027059524