Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_028943.1
Length=29237
Score E
Sequences producing significant alignments: (Bits) Value
seq6992 149 1e-31
seq6336 98.7 2e-16
>seq6992
Length=1569
Score = 149 bits (164), Expect = 1e-31
Identities = 232/324 (72%), Gaps = 11/324 (3%)
Strand=Plus/Minus
Query 23103 ACGAGTACCACCGCCACCGCGTATGCCACTGCCCGTGCGCTGGGACTGCGTGCCAAAATC 23162
|| || ||||| | | || ||||||||||| |||||||| || ||||||||||| |||
Sbjct 1557 ACCAGCACCACGACGGCGGCATATGCCACTGCGCGTGCGCTCGGCCTGCGTGCCAAGATC 1498
Query 23163 GACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAACGTCGGGGTAAACGGTGTTACCGGC 23222
||| || ||||||||||| || | ||||||||||| || || || ||||||
Sbjct 1497 GACACCGAACAGGGCTGGCACAAGAGCCTGTCCAACGTGCCCGTGGCTGGCGTCACCGGC 1438
Query 23223 ATCAGC--GCATCTGTATTCTGGGATTTGCAGGAGTCCGG-CACCGATGCTGACCTGCTG 23279
||| | | || || || |||||| ||||||| ||||| ||||||||| | | | ||
Sbjct 1437 ATCTCCAAGGATGTGCAT--TGGGATCTGCAGGA-TCCGGCCACCGATGCCGGCATCCTC 1381
Query 23280 AACGAGTCAGGCGTCACAACGCTGATTCGTCGT--GACGGTTTCCGCTTCTGGGGTAACC 23337
|||||| | | |||| |||||| | | ||| |||| ||||||||||| |
Sbjct 1380 AACGAGGGCGACATCACCACGCTGGT--GACGTTCAACGGCCAGCGCTTCTGGGGATCGC 1323
Query 23338 GTACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTGC 23397
| || ||| | || ||| ||||| ||| || | ||| |||||||||||| | |
Sbjct 1322 GCACGTGCGCGGAGGACAACATGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCC 1263
Query 23398 TGGCCGACACGATGGCTG-AGGCG 23420
|||||||||| || || | |||||
Sbjct 1262 TGGCCGACACCATCGCCGAAGGCG 1239
>seq6336
Length=1727
Score = 98.7 bits (108), Expect = 2e-16
Identities = 119/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 10543 GGCGCTGTTTGCGAAAATCACCCCGACCGATGACCTTATCGCGATGAACAAGGCCGCGCA 10602
|||||||||||| | ||| ||||||| ||||| ||| | || |||||| || |||
Sbjct 371 GGCGCTGTTTGCCCAGATCGAGCCGACCGCCGACCTGATCACCATCAACAAGTCCAAGCA 312
Query 10603 GAAGGTCTATACCTCAATGGAAATTCAGCCGAACTTTGCCAATACCGGCAAATGTTATCT 10662
|||| |||| ||| || || | ||| ||| || ||||| |||||||| |||||
Sbjct 311 GAAGCTCTACACCAGCATCGAGGTGCAGGAGAAATTCGCCAACACCGGCAAGGCGTATCT 252
Query 10663 GGTGGGTCTGGCCGTCACCGATGACCCGGCAAGCCTCGGCAC 10704
|| || ||||| |||||||| ||||| ||||| |||||
Sbjct 251 CGTCGGCCTGGCGGTCACCGACTCGCCGGCCAGCCTGGGCAC 210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 93423389833668
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |