Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq6992 149 1e-31 seq6336 98.7 2e-16 >seq6992 Length=1569 Score = 149 bits (164), Expect = 1e-31 Identities = 232/324 (72%), Gaps = 11/324 (3%) Strand=Plus/Minus Query 23103 ACGAGTACCACCGCCACCGCGTATGCCACTGCCCGTGCGCTGGGACTGCGTGCCAAAATC 23162 || || ||||| | | || ||||||||||| |||||||| || ||||||||||| ||| Sbjct 1557 ACCAGCACCACGACGGCGGCATATGCCACTGCGCGTGCGCTCGGCCTGCGTGCCAAGATC 1498 Query 23163 GACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAACGTCGGGGTAAACGGTGTTACCGGC 23222 ||| || ||||||||||| || | ||||||||||| || || || |||||| Sbjct 1497 GACACCGAACAGGGCTGGCACAAGAGCCTGTCCAACGTGCCCGTGGCTGGCGTCACCGGC 1438 Query 23223 ATCAGC--GCATCTGTATTCTGGGATTTGCAGGAGTCCGG-CACCGATGCTGACCTGCTG 23279 ||| | | || || || |||||| ||||||| ||||| ||||||||| | | | || Sbjct 1437 ATCTCCAAGGATGTGCAT--TGGGATCTGCAGGA-TCCGGCCACCGATGCCGGCATCCTC 1381 Query 23280 AACGAGTCAGGCGTCACAACGCTGATTCGTCGT--GACGGTTTCCGCTTCTGGGGTAACC 23337 |||||| | | |||| |||||| | | ||| |||| ||||||||||| | Sbjct 1380 AACGAGGGCGACATCACCACGCTGGT--GACGTTCAACGGCCAGCGCTTCTGGGGATCGC 1323 Query 23338 GTACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTGC 23397 | || ||| | || ||| ||||| ||| || | ||| |||||||||||| | | Sbjct 1322 GCACGTGCGCGGAGGACAACATGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCC 1263 Query 23398 TGGCCGACACGATGGCTG-AGGCG 23420 |||||||||| || || | ||||| Sbjct 1262 TGGCCGACACCATCGCCGAAGGCG 1239 >seq6336 Length=1727 Score = 98.7 bits (108), Expect = 2e-16 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 10543 GGCGCTGTTTGCGAAAATCACCCCGACCGATGACCTTATCGCGATGAACAAGGCCGCGCA 10602 |||||||||||| | ||| ||||||| ||||| ||| | || |||||| || ||| Sbjct 371 GGCGCTGTTTGCCCAGATCGAGCCGACCGCCGACCTGATCACCATCAACAAGTCCAAGCA 312 Query 10603 GAAGGTCTATACCTCAATGGAAATTCAGCCGAACTTTGCCAATACCGGCAAATGTTATCT 10662 |||| |||| ||| || || | ||| ||| || ||||| |||||||| ||||| Sbjct 311 GAAGCTCTACACCAGCATCGAGGTGCAGGAGAAATTCGCCAACACCGGCAAGGCGTATCT 252 Query 10663 GGTGGGTCTGGCCGTCACCGATGACCCGGCAAGCCTCGGCAC 10704 || || ||||| |||||||| ||||| ||||| ||||| Sbjct 251 CGTCGGCCTGGCGGTCACCGACTCGCCGGCCAGCCTGGGCAC 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93423389833668