Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028950.1 Length=223932 Score E Sequences producing significant alignments: (Bits) Value seq2656 86.0 9e-12 >seq2656 Length=5339 Score = 86.0 bits (94), Expect = 9e-12 Identities = 214/322 (66%), Gaps = 6/322 (2%) Strand=Plus/Minus Query 99224 TCAGGAACCACATCGCCAGCACGACGAACGATCACCTTATCGCCAATTCGCAGACCTTTG 99283 ||||||| |||||| || || || | ||||| || ||||||| || | | | ||||| Sbjct 4435 TCAGGAATCACATCCCCTGCCCGCCTGACGATGACTGTATCGCCGATATGGATATCTTTG 4376 Query 99284 CGATGGATTTCATCTTCGTTATGCAGTGTTGCGTTGGAAACCCACACACCGCCCACGAAA 99343 || | | ||||| ||||||||||| || ||||| | || ||| || || || || Sbjct 4375 CGGCGTAACTCATCCTCGTTATGCAGCGTGGCGTTAGTCACAGTCACTCCTCCGACAAAC 4316 Query 99344 ACGGGCTTCAGGCGCCCCACGGGGGTGATGGCTCCCGTTCTACCTACTTGAACTTCAATC 99403 || || ||||| | | || || || ||||| || || | || ||||| || || Sbjct 4315 ACCGGTTTCAGCCTGGCAACCGGCGTAATGGCGCCTGTGCGGCCCACTTGCACAGTGATA 4256 Query 99404 GCCTCTAGCGTCGTTACAGCCTCTTCTGCAGGGAACTTCCACGCGATAGCAAAACGAGGG 99463 | || | | ||| | || ||||| || | ||||| |||| || |||| || Sbjct 4255 TCTTCCACCAGCGTCTCGGCTTCTTCAGCTGCAAACTTGTGTGCGACGGCCCAACGCGGC 4196 Query 99464 GCGCGAGACACATAACCGACAAT---CGCCTGAGCAGCACGATAGTTCAGCTTGACGACA 99520 ||||| || ||| | || |||| || ||| | || || || | |||| || Sbjct 4195 GCGCGTGAGACAAAGCC--CAATGTACG-CTGCAAATCAAAATCATTGACCTTGTAAACC 4139 Query 99521 AAACCATCAATGCCGAACGGCA 99542 | |||||||||| | ||||||| Sbjct 4138 ACACCATCAATGTCAAACGGCA 4117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716346161651520