Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_028950.1
Length=223932
Score E
Sequences producing significant alignments: (Bits) Value
seq2656 86.0 9e-12
>seq2656
Length=5339
Score = 86.0 bits (94), Expect = 9e-12
Identities = 214/322 (66%), Gaps = 6/322 (2%)
Strand=Plus/Minus
Query 99224 TCAGGAACCACATCGCCAGCACGACGAACGATCACCTTATCGCCAATTCGCAGACCTTTG 99283
||||||| |||||| || || || | ||||| || ||||||| || | | | |||||
Sbjct 4435 TCAGGAATCACATCCCCTGCCCGCCTGACGATGACTGTATCGCCGATATGGATATCTTTG 4376
Query 99284 CGATGGATTTCATCTTCGTTATGCAGTGTTGCGTTGGAAACCCACACACCGCCCACGAAA 99343
|| | | ||||| ||||||||||| || ||||| | || ||| || || || ||
Sbjct 4375 CGGCGTAACTCATCCTCGTTATGCAGCGTGGCGTTAGTCACAGTCACTCCTCCGACAAAC 4316
Query 99344 ACGGGCTTCAGGCGCCCCACGGGGGTGATGGCTCCCGTTCTACCTACTTGAACTTCAATC 99403
|| || ||||| | | || || || ||||| || || | || ||||| || ||
Sbjct 4315 ACCGGTTTCAGCCTGGCAACCGGCGTAATGGCGCCTGTGCGGCCCACTTGCACAGTGATA 4256
Query 99404 GCCTCTAGCGTCGTTACAGCCTCTTCTGCAGGGAACTTCCACGCGATAGCAAAACGAGGG 99463
| || | | ||| | || ||||| || | ||||| |||| || |||| ||
Sbjct 4255 TCTTCCACCAGCGTCTCGGCTTCTTCAGCTGCAAACTTGTGTGCGACGGCCCAACGCGGC 4196
Query 99464 GCGCGAGACACATAACCGACAAT---CGCCTGAGCAGCACGATAGTTCAGCTTGACGACA 99520
||||| || ||| | || |||| || ||| | || || || | |||| ||
Sbjct 4195 GCGCGTGAGACAAAGCC--CAATGTACG-CTGCAAATCAAAATCATTGACCTTGTAAACC 4139
Query 99521 AAACCATCAATGCCGAACGGCA 99542
| |||||||||| | |||||||
Sbjct 4138 ACACCATCAATGTCAAACGGCA 4117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716346161651520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |