Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028953.1 Length=110764 Score E Sequences producing significant alignments: (Bits) Value seq6643 123 2e-23 seq6728 87.8 1e-12 >seq6643 Length=1653 Score = 123 bits (136), Expect = 2e-23 Identities = 134/177 (76%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 97342 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 97401 ||||||||||| ||| || ||||| |||| |||||||| || || ||||| || ||||| Sbjct 856 CGGCACGTTGGCTTTAATCAGGCCGGTGATCACATCCACCGATGGTCGCTGGGTTGCCAG 915 Query 97402 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 97461 || || || ||||| | ||| ||||| || || || | ||| ||| | ||| | Sbjct 916 CACCAGGTGGATACCTGATGCACGCGCTTTTTGTGCCAGGCGCGCAA---TCAGCTCTTC 972 Query 97462 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGAT 97518 |||||||| | | ||||||| ||||||||||||||||||| ||| |||||||| Sbjct 973 CACTTTCTTGCCGACCACCATCATCAGGTCTGCGAGTTCGTCGATCACGACCACGAT 1029 >seq6728 Length=1632 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/157 (73%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 97349 TTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGA 97408 |||| ||||| || || |||| || ||||| || ||||||||||| || |||| | Sbjct 749 TTGGCCTTGATCAGACCGGTGATCACGTCCACCGACGGCCGCTGCGTAGCAAGGATCAAG 808 Query 97409 TGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTC 97468 || |||||||| || ||||||||||| || | ||| | ||| | |||| | ||| Sbjct 809 TGGATACCGGCCGCACGCGCCTTCTGCGCCAGGCGTGCGATGAGCTCTTCGA---CCTTC 865 Query 97469 TTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGA 97505 ||| | || |||||| | ||| |||| |||||||| Sbjct 866 TTGCCGACGATCATCATCATGTCGGCGAATTCGTCGA 902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354267809328350