Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq6177 156 1e-33 >seq6177 Length=1770 Score = 156 bits (172), Expect = 1e-33 Identities = 527/813 (65%), Gaps = 12/813 (1%) Strand=Plus/Plus Query 40764 ATCAAGTAAGGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATG 40823 ||||| || ||| ||| |||||| | ||| |||| ||| || ||| |||| || Sbjct 352 ATCAATAAAAGTTTGCATAGGTGTTTTTCCATAGCAATATTTACCAGTATGAGTTCTTTG 411 Query 40824 GTGATTATAATACATTAACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATCCGTATA 40883 |||||||| ||| ||| ||||||||| ||||||| | | || ||| Sbjct 412 CGTATTATAATGATTTAGCCAGGAATCTAAATCTTTTTGTAATTCTGATGAAGAATGATA 471 Query 40884 AATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTC 40943 | ||| || | ||| || || ||||| || | | || || || || || || Sbjct 472 CAGTTTTTTACGAAAGGCTACAGCATAAAACTCATCTTGAATGGTACGGTGAAAACGCTC 531 Query 40944 GCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTAT 41003 ||| |||||||| ||||| ||| || | || || || ||||| || || || | || Sbjct 532 GCAAATACCATTTGTCTGAGGACTTTTGGCCTTAGTCTTAGTATGGTCAATATCTTCTAA 591 Query 41004 CGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTC 41063 ||||| || | | ||| || || | ||| || |||||||| || |||| | ||| Sbjct 592 GGCTAAGTACAATTGATATTCATGTTGCTCTCTGTTACCACAATACTCTGTTCCCCTGTC 651 Query 41064 AGTTAATATGCGTAACATCGGTAAACC--TTGGCTTTCAAAGTATGGTAACACTTTATCA 41121 |||||| | | ||| | | | | || ||| ||| | || | ||||||||| Sbjct 652 AGTTAAAACCCTTAAAAGACGAATGTCATTTTGCTCATAAA--AAGGGATGACTTTATCA 709 Query 41122 TTCAGCATATCCGCAG-CACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCAC 41180 || |||||||| || | ||| | ||| | || ||| ||||| |||| || || Sbjct 710 TTGAGCATATCAGCTGATACT-AAAGCATTTTTACGATCATAGAGTTTAACAAAGGCTAC 768 Query 41181 TTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCC 41240 || | ||||| |||||||| |||||||| |||||| |||| || ||||||| || || Sbjct 769 CTTTGTATAAGTGTCAATAAAAGTTTGTTGGTAAATATGACCTACCCCTTTGATATTACC 828 Query 41241 CACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCACA 41300 |||||| | || ||||||| ||| | |||||| || || ||| || ||||| || Sbjct 829 CACATAATAGGTGTCTTGTGCGCCTAAATAGCCTGGATGATGCGTCTCTATTTCTCCTTG 888 Query 41301 GGC---AATCTCATCTTCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTAT 41357 || ||||| ||| | || | ||||| || || |||| || | || || Sbjct 889 TGCCTGTTTCTCAGCTT-TGGCT--CTTTCTAAAGCCGTTATCTGTTCATCTGTAAGAAT 945 Query 41358 AATACCTTGTTCTGCAACCAGTTTTTCCAGGGCGATTAATCTTTGCTTAAAATTGGCAAG 41417 || |||| | ||| ||| | || |||| | | || |||| | || | Sbjct 946 TATTCCTTCCTGATTGACCTTAGCTTCTAATGCTTTTAAACGCTTCTGAAAAGTTGCTAA 1005 Query 41418 ATGATGACGTAACCAAATCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACG 41477 || ||| | | |||||| || ||||| || || | |||||||| || || ||||| Sbjct 1006 ATCATGCCTCAGCCAAATAGAGCGTACTCCCCCGGGTGAAACAATTATACCCTGTTTCTT 1065 Query 41478 GAGTTCGTTACTCACTCTTACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAAC 41537 ||||| || ||||| | || ||| |||| || || | || | || ||||| Sbjct 1066 TAGTTCATTTGATACTCTGAGTTGGCCATATGCAGGTAAGTCTACGGCCATTTTAACAAC 1125 Query 41538 AGCTTGCTCTATTGCCTCATCAACACGATTTTT 41570 |||| |||| | |||| || |||||||| Sbjct 1126 TGCTTCTTCTACTAAAACATCTACTCGATTTTT 1158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166699271677932