Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq7644 271 2e-68 seq3530 125 2e-24 >seq7644 Length=1437 Score = 271 bits (300), Expect = 2e-68 Identities = 313/417 (75%), Gaps = 6/417 (1%) Strand=Plus/Minus Query 39464 CCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGC--GACGGTCATCGAAGTCGA 39521 |||||||| || | ||||| ||||||| | | ||| ||| | || |||||||| Sbjct 435 CCGTACTTGTCCTTCACGTAGTCGATCACGCGGTCGCGGTTGGACTGGCA--GAAGTCGA 378 Query 39522 TGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 39581 |||| | ||||||||| ||||||||||| ||||||||||| |||||||||||||| |||| Sbjct 377 TGTCGAAGTCGGGCATCGAGACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGGCCGT 318 Query 39582 GAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAG 39641 | | | ||||| |||||||||||| | ||||||||| |||| |||||||| | | Sbjct 317 GGCGAAGCGGGTCGAGGTCGGTGATCTTCATGGCGTACGCCGCCATGGAGCCAGCGCCCG 258 Query 39642 AGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGA 39701 |||| || || |||||||||| | ||||| |||||||||||| |||||||||||||| Sbjct 257 AGCCTCGGCCGGGGCCGACCCGGATGCCGTTGTCCTTCGCCCAGTTGATGAAGTCGGCGA 198 Query 39702 CGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTAGTCGACCT 39761 ||||||||||||| |||||||||||||| ||| || || ||||||| ||| ||| Sbjct 197 CGACGAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATCCCGGTCTCGTACTCGGCCT 138 Query 39762 GCGTTCGGTGCTCGTCGTCG-TACCCCTGCGGGAAGCGACGGTCCATGCCGATGAGCACC 39820 || | || || |||| | | || || |||| |||| | | | |||| ||| Sbjct 137 GCTTGCGCACCTTGTCGGGGATGCCGCT-CGGGTAGCGGTGATGGAGGCCGGCCTCGACC 79 Query 39821 TGCTCGCGGAAGAACTGGCCCTCCGTCTGGCCTTCGGGCACCGGGAAGCGGGGCATG 39877 | || | || | | | ||||||| ||| |||||||| ||||| ||||||||| Sbjct 78 TCCTTGATGAGCCAGCTGTCTTCCGTCTCGCCGTCGGGCACGGGGAAACGGGGCATG 22 Score = 118 bits (130), Expect = 3e-22 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 38525 GCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATG 38584 || ||||| ||||| || || | || ||||| | |||||| |||||||||||||||| Sbjct 1377 GCGCCCTTGCGGAAGATCTCGCGGTGCTCGGCCATCTCCTCGGCCTTCTTCTTGCCCATG 1318 Query 38585 GCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTC 38644 ||||| || || |||||||| || ||| |||| || |||| | |||||| | || | Sbjct 1317 GCGCGGCGCAGCAGGTCGGCTCCGCCCAGGCTGTAGCCACCCAGCACCTGCGCGGTCTGC 1258 Query 38645 TGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCG 38702 |||||| |||||||||| |||| ||| ||||| ||| |||||||||| || Sbjct 1257 ATCACCTGTTCCTGGTAGACCATGATGCCGTAGGTCTCTGACAGCATCTCGGCCACCG 1200 >seq3530 Length=3544 Score = 125 bits (138), Expect = 2e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573 |||||| || || | |||||||||||| || ||||||||||| ||||| ||||| || | Sbjct 898 GAAGTCAATATCGAAGTCGGGCATGGATACCCGCTCAGGGTTAAGGAAACGCTCAAACAG 839 Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 || || || ||||||||||| || || || ||| ||| || |||| || || Sbjct 838 CAGATTGTATTTGAGTGGGTCCAGGTCAGTAATGCCCAGGCTGTAAGCCACCAGTGAACC 779 Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693 ||| | ||||| | || ||||| ||| ||| || || | || |||||| ||| || Sbjct 778 AGCACCGGAGCCCCTGCCCGGGCCTACCGGCACGCCATTATTTTTAGCCCAGTTGATAAA 719 Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCG 39745 || || |||| ||||| || ||||||||||||||| | || ||| || Sbjct 718 ATCAGCTACGATCAGGAAATAGCCTGGGAACCCCATCTGGATAATGATGCCG 667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160217002154900