Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_028976.1
Length=50113
Score E
Sequences producing significant alignments: (Bits) Value
seq7644 271 2e-68
seq3530 125 2e-24
>seq7644
Length=1437
Score = 271 bits (300), Expect = 2e-68
Identities = 313/417 (75%), Gaps = 6/417 (1%)
Strand=Plus/Minus
Query 39464 CCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGC--GACGGTCATCGAAGTCGA 39521
|||||||| || | ||||| ||||||| | | ||| ||| | || ||||||||
Sbjct 435 CCGTACTTGTCCTTCACGTAGTCGATCACGCGGTCGCGGTTGGACTGGCA--GAAGTCGA 378
Query 39522 TGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 39581
|||| | ||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 377 TGTCGAAGTCGGGCATCGAGACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGGCCGT 318
Query 39582 GAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAG 39641
| | | ||||| |||||||||||| | ||||||||| |||| |||||||| | |
Sbjct 317 GGCGAAGCGGGTCGAGGTCGGTGATCTTCATGGCGTACGCCGCCATGGAGCCAGCGCCCG 258
Query 39642 AGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGA 39701
|||| || || |||||||||| | ||||| |||||||||||| ||||||||||||||
Sbjct 257 AGCCTCGGCCGGGGCCGACCCGGATGCCGTTGTCCTTCGCCCAGTTGATGAAGTCGGCGA 198
Query 39702 CGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTAGTCGACCT 39761
||||||||||||| |||||||||||||| ||| || || ||||||| ||| |||
Sbjct 197 CGACGAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATCCCGGTCTCGTACTCGGCCT 138
Query 39762 GCGTTCGGTGCTCGTCGTCG-TACCCCTGCGGGAAGCGACGGTCCATGCCGATGAGCACC 39820
|| | || || |||| | | || || |||| |||| | | | |||| |||
Sbjct 137 GCTTGCGCACCTTGTCGGGGATGCCGCT-CGGGTAGCGGTGATGGAGGCCGGCCTCGACC 79
Query 39821 TGCTCGCGGAAGAACTGGCCCTCCGTCTGGCCTTCGGGCACCGGGAAGCGGGGCATG 39877
| || | || | | | ||||||| ||| |||||||| ||||| |||||||||
Sbjct 78 TCCTTGATGAGCCAGCTGTCTTCCGTCTCGCCGTCGGGCACGGGGAAACGGGGCATG 22
Score = 118 bits (130), Expect = 3e-22
Identities = 133/178 (75%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 38525 GCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATG 38584
|| ||||| ||||| || || | || ||||| | |||||| ||||||||||||||||
Sbjct 1377 GCGCCCTTGCGGAAGATCTCGCGGTGCTCGGCCATCTCCTCGGCCTTCTTCTTGCCCATG 1318
Query 38585 GCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTC 38644
||||| || || |||||||| || ||| |||| || |||| | |||||| | || |
Sbjct 1317 GCGCGGCGCAGCAGGTCGGCTCCGCCCAGGCTGTAGCCACCCAGCACCTGCGCGGTCTGC 1258
Query 38645 TGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCG 38702
|||||| |||||||||| |||| ||| ||||| ||| |||||||||| ||
Sbjct 1257 ATCACCTGTTCCTGGTAGACCATGATGCCGTAGGTCTCTGACAGCATCTCGGCCACCG 1200
>seq3530
Length=3544
Score = 125 bits (138), Expect = 2e-24
Identities = 167/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573
|||||| || || | |||||||||||| || ||||||||||| ||||| ||||| || |
Sbjct 898 GAAGTCAATATCGAAGTCGGGCATGGATACCCGCTCAGGGTTAAGGAAACGCTCAAACAG 839
Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633
|| || || ||||||||||| || || || ||| ||| || |||| || ||
Sbjct 838 CAGATTGTATTTGAGTGGGTCCAGGTCAGTAATGCCCAGGCTGTAAGCCACCAGTGAACC 779
Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693
||| | ||||| | || ||||| ||| ||| || || | || |||||| ||| ||
Sbjct 778 AGCACCGGAGCCCCTGCCCGGGCCTACCGGCACGCCATTATTTTTAGCCCAGTTGATAAA 719
Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCG 39745
|| || |||| ||||| || ||||||||||||||| | || ||| ||
Sbjct 718 ATCAGCTACGATCAGGAAATAGCCTGGGAACCCCATCTGGATAATGATGCCG 667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160217002154900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |